Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00365 ATGGAGAATATTGGTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGAGCTTGACAGTAATTGGGGGTTCGAGGAGGCTTTATCAGGCTACTACGATTCCAGTTCCCCTGATGGTGCTGCTTCGTCTGCAGCATCTAAGAACATTGTTTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCTATTGATTACATCCAGCATTTGCACGAGCAGGAGAAGATAATTCAAGCTGAGATCATGAATCTTGAATCTGGGATGCCAAACAAGAGTAGTTCGAGCTATGACTTTGAGCAGGAACAGCTTCCTGTGGTGCTGAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCATTTCAAGAAACTCCCCAATTGAACTGAGCGTGGCCTACATGGGGGAGAAAATTGCCGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATCACTTCGTTTTCAGGGAGGCTTCATAAAACAGTCTTCATCGAGAAGCACCAGACCACTTTAGCAAAAGTGGAAATGTGGAACACCCATTAG 687 0.4512 MENIGEEYKHYWETTMFLQTQELDSNWGFEEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMNLESGMPNKSSSSYDFEQEQLPVVLRSKKKRTEQIYDSVISRNSPIELSVAYMGEKIAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLHKTVFIEKHQTTLAKVEMWNTH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00365 228 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 216 - -
Vimu10g00365 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Vimu10g00365 228 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 117 - -
Vimu10g00365 228 SMART finulus 54 103 IPR011598 GO:0046983
Vimu10g00365 228 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Vimu10g00365 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 113 IPR036638 GO:0046983
Vimu10g00365 228 Gene3D - 44 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00365 Vimu-Chr10 2596182 2597663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00365 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.465 5.70e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g00365 HLH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00365 - - vun:114163278 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00365 10 2596182 2597663 Vimu10g00365 10 2596182 2597663 ECH
Vimu7g01382 7 13220053 13225577 Vimu10g00365 10 2596182 2597663 PCT