Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00364 ATGTTTTTCTGTTATTTGCAGCCAAGGCAGCAAGAGATGGACTTGACAGTGACAGACAGGTGGCTAGATGTTGCGTTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGGTTGGAAATTTTGGTACCTAATGCTGGTATCAACAGCCATCTTACTTCAGGTGAACCTTGTTGGTCTTTTATTGCTCATAAAGTTGATGAAGTTGAGAAGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCGCAGCTCTAAGTGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGGGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCAATCTCCAAATGCACAACCTATGCGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAGTAACCAAACTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCGAAAGAAAGACCTGATGTGTGGGTTGATAACCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCGGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGACTGTTATGAACAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACTTGGACCTAGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGTCCGAAGGATAACTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTTCATTGAAAGGAGATTGGCATTATATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTCTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCTGACTGACTTTGAACAAATACTGAGTAGTGAACAGGACTTGGGGTTAGAGGCTCATCAGTGTGGAGATAACACACAAGACCAAAATACATCTTTCGCTGACAAGGGAAATCGGCAAAGAAGTGAACAAGTTGCATGCGAAGACAGTATGACCTTCTTATCCCGAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGTGGGGATTGGTATAAAAAATGTAAAACCAATAGGAAAAAAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTACTAAAATATGTGAATATGAATCATCGGATGAAAGTGATTTTCGTGACAAGCAGGAGATTGACACCAGAGCAGGAAGTGTTAACTTTTATAAGAAACATTCAGAACCCCAGGAGAATGAGGAACAAGAAAATGTCCAAGTTTCTAGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGACAACAAGCTGGAGGACTTGAAGGACAATGATCATGAAAGAATGTTGATTCCTGAAATAGAAATGACTGATAGGTACAATGACCAAAACAATGAGGTGAAAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTAGTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAACTAGCAAAAACCTCCGATGCAGAAACCTCCAATGCAGAAACAGAGCCTATAACTACAAAGAAAAATAAGGTTAGCTTCATGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 2142 0.3996 MFFCYLQPRQQEMDLTVTDRWLDVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHKVDEVEKFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERQSPNAQPMRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDNPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLGDIKQLLSNISKSEDVSTVDHYRKKYCPKDNWSFFCGCSIYFHTAIPSLKGDWHYILQLALRRFKLEVLMGGGKVTSNLTSATHLVAFLVPGCLTDFEQILSSEQDLGLEAHQCGDNTQDQNTSFADKGNRQRSEQVACEDSMTFLSREKGIKRKRGRPVGIGIKNVKPIGKKTRRARPQNVKKPTKICEYESSDESDFRDKQEIDTRAGSVNFYKKHSEPQENEEQENVQVSRTVESSEQNKVDNKLEDLKDNDHERMLIPEIEMTDRYNDQNNEVKEKLDFSADPLQAMLFDMIPSLGTQKVEQPMNLSVREEKLAKTSDAETSNAETEPITTKKNKVSFMDAANELLKDW 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00364 713 Pfam ATP dependent DNA ligase domain 24 126 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu10g00364 713 Gene3D BRCT domain 280 373 IPR036420 -
Vimu10g00364 713 SUPERFAMILY Nucleic acid-binding proteins 134 279 IPR012340 -
Vimu10g00364 713 PANTHER DNA LIGASE 4 22 296 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vimu10g00364 713 MobiDBLite consensus disorder prediction 531 612 - -
Vimu10g00364 713 MobiDBLite consensus disorder prediction 543 587 - -
Vimu10g00364 713 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 24 127 - -
Vimu10g00364 713 Gene3D BRCT domain 390 465 IPR036420 -
Vimu10g00364 713 FunFam DNA ligase 129 284 - -
Vimu10g00364 713 Pfam ATP dependent DNA ligase C terminal region 150 263 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vimu10g00364 713 Gene3D DNA ligase/mRNA capping enzyme 7 128 - -
Vimu10g00364 713 Coils Coil 582 602 - -
Vimu10g00364 713 Pfam DNA ligase IV 339 372 IPR021536 GO:0003910
Vimu10g00364 713 Gene3D - 129 279 IPR012340 -
Vimu10g00364 713 ProSiteProfiles ATP-dependent DNA ligase family profile. 25 163 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu10g00364 713 ProSitePatterns ATP-dependent DNA ligase signature 2. 102 126 IPR016059 GO:0003909
Vimu10g00364 713 MobiDBLite consensus disorder prediction 478 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00364 Vimu-Chr10 2572325 2583271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00364 25 280 Core DNA Replication Machinery Family AT1G08130 27.925 8.46e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00364 K10777 - qsa:O6P43_002803 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00364 10 2572325 2583271 Vimu10g00364 10 2572325 2583271 ECH