Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00359 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTAAAAGCAAGTAGCACAAAAAACAGAAGGAAGGAACACAAAGAGAAGTCAAGGTCTCATAAACTCAGAGTTGGTACAAACACATCAAAGAAAAGAGTTGCTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAAAGTGATTATTAGAAAAACTCTCCATAAAACTGATGGGAACTCTTCTCGTATGGTGTCTTCAACAAACCTACAAGGAAGAAAAAATCCTCATATTTCTAGAAAAGAGGGGAATGGTGTTGATGAAGAGGCAAAAATTAAAAAACGTAAAAGGAACAAAAAGAAGAGCAGACAAAGAGACAGCATGGATCATGATGATGCTTCACGCCTTCGAAGGAGAACAAGATACCTCTTAATAAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCGAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGGGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATTATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTTAAGGAAGAGGCTGCTGTGCCTGATGGTGATATTGCACTACTAAGTCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACAGCATAAATACAGAAGGTGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTTGAGTTTGTGGTCTTTGAATGAAGAATGTCCTCCTGTTGATGAAGACCTTAGTCTACAATATTATTCTGTCAATAGCTTCATTGATTCTGATGAATCTGGGGAAATAGCATGCGGCCGTAGGCAGCGCAAAGCTGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAACTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGGGAAAATAAACATCCCAATAATGAGAGTAGGGATAGAATAAGAGAGGGCTCTTCCGGCCTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGGCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCCGTGAAGGAGGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAAGTATCAATCAGAAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAACATTCTACATCTCCAAACATGGAGAAAGATGAGTTTCTGAAATCACAAGCTCCCAAAATTACTCTGATTCATTCCCAGAAGGATGGTCAAAGCATCACGGGACAAGAGAAAAATAAATTATGCAACAGTCTTTTGAAGAGAAGGAAGCAAAAACCATCTCCACCTCTGTCAAGAGAAAACAGCAACAAAGAATCCATGGAGATGAGTGATGATGTTAATTTGAAGAAGCTTTTGAAAGAAAGGAAAAAAAGGGTAAATTTTATGTATGAAGGAGACTCTCAGATAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAATGAAGTTCAAAATTGCAGAGCTAAGGGATCAATAAATGAACCCTCTATTATATATATTCCCACAGCCCAATTAAGGGAAAAGGTTTGA 2139 0.3857 MRDAENLNKKGSGKSSYSKEQIKSKLFSSKLKASSTKNRRKEHKEKSRSHKLRVGTNTSKKRVADSSIKAPLEDSSNKKVIIRKTLHKTDGNSSRMVSSTNLQGRKNPHISRKEGNGVDEEAKIKKRKRNKKKSRQRDSMDHDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAVPDGDIALLSPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENASNDSTSSLSLWSLNEECPPVDEDLSLQYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQLSEDEDWGPGKRKRREKESDAVNTLMTLHERENKHPNNESRDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRKYQSEEQLQSFTSQISKHSTSPNMEKDEFLKSQAPKITLIHSQKDGQSITGQEKNKLCNSLLKRRKQKPSPPLSRENSNKESMEMSDDVNLKKLLKERKKRVNFMYEGDSQIAELEFERLSKVKSKVDSMKQKLNEVQNCRAKGSINEPSIIYIPTAQLREKV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00359 712 MobiDBLite consensus disorder prediction 91 106 - -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 322 372 - -
Vimu10g00359 712 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 23 711 - -
Vimu10g00359 712 SUPERFAMILY Homeodomain-like 491 557 IPR009057 -
Vimu10g00359 712 Gene3D - 490 559 - -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 107 125 - -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 610 637 - -
Vimu10g00359 712 CDD homeodomain 496 543 IPR001356 GO:0003677
Vimu10g00359 712 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Vimu10g00359 712 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 1 145 - -
Vimu10g00359 712 Pfam PHD-finger 235 290 IPR019787 -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 332 346 - -
Vimu10g00359 712 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Vimu10g00359 712 Coils Coil 669 689 - -
Vimu10g00359 712 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Vimu10g00359 712 SMART HOX_1 490 552 IPR001356 GO:0003677
Vimu10g00359 712 MobiDBLite consensus disorder prediction 34 57 - -
Vimu10g00359 712 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Vimu10g00359 712 FunFam pathogenesis-related homeodomain protein 490 554 - -
Vimu10g00359 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Vimu10g00359 712 SMART PHD_3 235 288 IPR001965 -
Vimu10g00359 712 CDD PHD_PRHA_like 235 287 IPR045876 -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 10 33 - -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 432 484 - -
Vimu10g00359 712 MobiDBLite consensus disorder prediction 76 90 - -
Vimu10g00359 712 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00359 Vimu-Chr10 2542371 2548444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00359 135 556 Homeobox Transcription Factor Family AT4G29940 57.275 1.02e-154 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vimu10g00359 Homeodomain 7.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00359 - - gmx:100816912 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00359 10 2542371 2548444 Vimu10g00359 10 2542371 2548444 ECH
Vimu7g01375 7 13159930 13164480 Vimu10g00359 10 2542371 2548444 PCT