Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00343 ATGGAAGCCCGAAAGAATCTGGTGAATTTAAAAGAACTTGACCTTTCTAAATCCAAGAAGTTAAAGGGGTTGCTAGATTTATCAAAAGCCATGAATCTTGAAGTGCTGATTCTCAGGAGTTGTTCCATGTTGACTAGTGTTCACCAATCTATTTTCTCTCTGCCTAAACTTGAGAAGTTGGACCTTGAGAGATGCGAGTGCCTTACAATACTTGCAAGCTGTCCCAATTTACATGGCCTCAGTTATCTCAACCTTGATTTTTGTGAGAATCTAATGAAATTCTCACTGATTTCAGACAATATGAAAGAACTCAGATTGAGATGTTCAAAGATCAAAGCACTTCCTCCATCATTTGGACATCAAAGGAAGCTCGAATTGCTTCATCTGGAAGAAAGTGGCATCGAGAGATTACCTTCTCTGAAAAATCTCACTCAACTTCTACATCTAGATGTAAGCTTTTGTGATAAGCTTCAAACAATAGCTGAGCTTCCACCGCTAAACGTCCAATGTTGCCATTTACTTCGAACTGTACCAAAGCTTCCCACATGCCTTAAAACTCTACACACCAAAAACTGCAGTTCCCTTCAGAAATTATCCCAGGTAATTTCTTCTTGTGGTTTACGATTAAATCATGTCTGTACAACAACGTAA 651 0.3871 MEARKNLVNLKELDLSKSKKLKGLLDLSKAMNLEVLILRSCSMLTSVHQSIFSLPKLEKLDLERCECLTILASCPNLHGLSYLNLDFCENLMKFSLISDNMKELRLRCSKIKALPPSFGHQRKLELLHLEESGIERLPSLKNLTQLLHLDVSFCDKLQTIAELPPLNVQCCHLLRTVPKLPTCLKTLHTKNCSSLQKLSQVISSCGLRLNHVCTTT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00343 216 Gene3D Ribonuclease Inhibitor 93 210 IPR032675 -
Vimu10g00343 216 Pfam Leucine rich repeat 32 88 IPR001611 GO:0005515
Vimu10g00343 216 Gene3D Ribonuclease Inhibitor 3 92 IPR032675 -
Vimu10g00343 216 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 74 198 - -
Vimu10g00343 216 SUPERFAMILY L domain-like 7 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00343 Vimu-Chr10 2371272 2372472 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00343 6 162 WRKY Transcription Factor Family AT4G12020 37.736 1.04e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00343 - - var:108330140 315.464