Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00341 ATGTCAGACAGCAATGTTCCTGAAATAAAGTACGATGTTTTTGTAAGCTTCAGAGGCAAGGAAATTCGTGACGGATTTCTTAGCCATCTGACTGAGGCATTTGACATGAAGAAAATAAATGGCTTTGTGGATGATAAACTTGAGAAGGGAGAAGAAATATGGCCATCACTTGTCACAGCTATTGAAAGATCAGCCATTTCGTTGATTATCTTCTCACCAGACTATGCATCTTCTCGTTGGTGTTTAGATGAAGTTGTGAAAATATTTGAATGTAAAGAGAAATATGAACGGATTGTCATTCCGGTTTTCTACAAAGTGGCACCAACAGATGTAAGACATCAATCTGGAAGTTACGAAAATGCATTTGCCAACCATCGACTAAACTATACGACAAAGGTGCAAATGTGGAAAGATGCTTTGAAAAAATCTGCTGATTTATCTGGAATTGAATCGTCCAAATTTAGAAATGATGCTGAGGTGGTTAAAGAAATTGTCAATCTTGTGGATAAGAGGTTGAATAAACCCCAAGTTATCCGAAAAGAACTTGTTGGAATCCATGAAAAAATTGCTACTTTGGAATCATGGATAAGTGATGAACCAAAAACCACTCAACTCATTGGAATTTGGGGTATGGGGGGTATTGGTAAGACAACCCTTGCAGAAGTGGTATTTCATAGACTACGATCTCAATATCAAGAATCATACTTCTTAGCCAATGAAAGAGATCAATCAAACAAACATGGATTAATTCATTTGAAGAAAATTTTGTTTTCTAAACTGTTAGGACAAGAAGTGGATATTGACACTCCAAATTACTTGCCTGAAAACATTGTTAGGAGAATTGGTTGTATGAAGGTTCTTGTTGTTCTTGACGATGTGAATGATTCTGATCACATAGAAAAACTGGTAGGAACTCCTGAAAATTTTGGTAAGGGTAGTACAGTGATTGTGACAACTCGAGATGAGCAAGTGCTTAGGATTAACAGAGTGAGTAAGACATACAAGGTGAAAGAATTTAGTTCTGATGAAGCACTTGAACTATTCAACTTGAATGCCTTCAGTGGAAGTTATAAGGAAAAGGAGTACGATGAGATATCTAAATCGGTAGTCCATTATGCCAAAGGCAATCCATTAGTTGTTATAGTTTTGGCTAAACTTCTTCGTGGAATAAATAAGGAAGAATGGGAAAGTGTGTTGGCCAAGCTAAAAACAATGCCTCCAAGAAAAGTTTATGATGTATTGAAACTGAGTTATGATAGTCTAGATCGCAAAGGGCAACAAATATTTCTAGATTTGGCATGTTTCTTTCTTAGAATTCTTGTGGCAGTGCAGGTGCGTGATCTGAAATGTTTATTGAAAGACAATGAAAGTGATAATTCAGTGGCTTTTGAGTTAAGAAGACTTGAAGACAAAGCTCTCATAACAATCTCTGAGGACGACAATACTGTATCCATGCATGATAGTTTACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAGTCTGTTGAAGATCCTGGAAGCCGCAGTCGGTTGTGGGATCCCAATGACATCAATCAAGCTTTGGAAAATGAAAAGGTTAGTGAGGCTATTAGAAGCATTCATTTGACATCTGATACTGCAATAACATCAACTAAGAAGCAAATGTTAAGTCCTCAAATATTTGCTATGAGAAAATTAAAATTTCTGGAAATTTCTGGGGTAAATGAAAATACTTACCACCAAGTTATTCTTGGTGAAGGAGCTCAGTTTTTGGCCACTGAACTAAGATTTGTTTGTTGGGACGAATTCCCTATGAAGTGCTTGCCAGAGAGTTTTAATGCTGAAAAACTTGTTATATTGGAATTGAGAATTAGCAGAATGAGAAAGCTGTGGGATGGTGTGAAGAATCTAGCGAATTTAAAAAGACTTATTCTCCATTGGGCCATTAAGTTAAAAGAACTTCCAGATTTATCAGGAGCCATAAGACTTGAAGAACTGTACGTCCGTGGTTGTGAGAGTTTGAGAAGCCTGCATTCATCTATTTTCTCTCTGCCAAAACTTGAGATATTGGATCTTAATAACTGCATGTCCATTACCATACTTTCAAGCAAGTCTGAGAAGAGGGTGTCTTCACTTTGGGGAAACAGTGAATTGAGGTGTCTAAACATGAGTAGTTGCGAGAAGCTTGAAACAATAGCAGAGCTTCCTCCTTTCCTTAAAACTTTAGATGTCTCCTTCTCAACATCACTGAAAACTCTACCAAAGCTTCCTCTTTCCCTTCAAATTCTAAATGTTTCCTTTTGCCAGTCACTTGAGAGTCTACCAGAGCTTCCTCCATTACTTTCAACTTTAAATGTCTCCTCATGCTATTCACTTCAAATTCCATCCAACCTTCCTTTGTCTCTTCAAATTGTAAACCTTTGTGACTGCCGCTTATTTCAGACTCTAGTTCAGCATATTCGATCCGTTAAAACAAAAGATACCAAAAATTCTAGATTAGTACATCAAACTCTATCAAAGCTTCCCCTACCCTCAGAGGTTTCGTGTTCCTGCAATTCAATCAAGACTGGAGCAGTGTCTCTCGAGTCTTTCACCTCTCTCATTGAAGATTGTCTATCTTCCCTGAAATTTATGACAGAAGAAGAATAA 2628 0.3733 MSDSNVPEIKYDVFVSFRGKEIRDGFLSHLTEAFDMKKINGFVDDKLEKGEEIWPSLVTAIERSAISLIIFSPDYASSRWCLDEVVKIFECKEKYERIVIPVFYKVAPTDVRHQSGSYENAFANHRLNYTTKVQMWKDALKKSADLSGIESSKFRNDAEVVKEIVNLVDKRLNKPQVIRKELVGIHEKIATLESWISDEPKTTQLIGIWGMGGIGKTTLAEVVFHRLRSQYQESYFLANERDQSNKHGLIHLKKILFSKLLGQEVDIDTPNYLPENIVRRIGCMKVLVVLDDVNDSDHIEKLVGTPENFGKGSTVIVTTRDEQVLRINRVSKTYKVKEFSSDEALELFNLNAFSGSYKEKEYDEISKSVVHYAKGNPLVVIVLAKLLRGINKEEWESVLAKLKTMPPRKVYDVLKLSYDSLDRKGQQIFLDLACFFLRILVAVQVRDLKCLLKDNESDNSVAFELRRLEDKALITISEDDNTVSMHDSLQEMAWEIVRQESVEDPGSRSRLWDPNDINQALENEKVSEAIRSIHLTSDTAITSTKKQMLSPQIFAMRKLKFLEISGVNENTYHQVILGEGAQFLATELRFVCWDEFPMKCLPESFNAEKLVILELRISRMRKLWDGVKNLANLKRLILHWAIKLKELPDLSGAIRLEELYVRGCESLRSLHSSIFSLPKLEILDLNNCMSITILSSKSEKRVSSLWGNSELRCLNMSSCEKLETIAELPPFLKTLDVSFSTSLKTLPKLPLSLQILNVSFCQSLESLPELPPLLSTLNVSSCYSLQIPSNLPLSLQIVNLCDCRLFQTLVQHIRSVKTKDTKNSRLVHQTLSKLPLPSEVSCSCNSIKTGAVSLESFTSLIEDCLSSLKFMTEEE 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00341 875 Pfam TIR domain 10 173 IPR000157 GO:0007165
Vimu10g00341 875 Gene3D - 339 422 IPR042197 -
Vimu10g00341 875 Gene3D - 8 170 IPR035897 -
Vimu10g00341 875 SMART till_3 10 146 IPR000157 GO:0007165
Vimu10g00341 875 Gene3D Ribonuclease Inhibitor 700 874 IPR032675 -
Vimu10g00341 875 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Vimu10g00341 875 SMART LRR_bac_2 729 749 - -
Vimu10g00341 875 SMART LRR_bac_2 750 770 - -
Vimu10g00341 875 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 174 - -
Vimu10g00341 875 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Vimu10g00341 875 PRINTS Disease resistance protein signature 205 220 - -
Vimu10g00341 875 PRINTS Disease resistance protein signature 280 294 - -
Vimu10g00341 875 PRINTS Disease resistance protein signature 675 691 - -
Vimu10g00341 875 PRINTS Disease resistance protein signature 373 387 - -
Vimu10g00341 875 Gene3D Ribonuclease Inhibitor 529 699 IPR032675 -
Vimu10g00341 875 Gene3D - 171 334 IPR027417 -
Vimu10g00341 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 432 IPR027417 -
Vimu10g00341 875 Pfam NB-ARC domain 201 408 IPR002182 GO:0043531
Vimu10g00341 875 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 728 IPR044974 GO:0006952
Vimu10g00341 875 SUPERFAMILY L domain-like 547 868 - -
Vimu10g00341 875 SUPERFAMILY "Winged helix" DNA-binding domain 409 522 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00341 Vimu-Chr10 2363831 2367166 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00341 11 786 WRKY Transcription Factor Family AT4G12020 29.634 1.28e-78 277