Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00326 ATGTTGAATTTCTGTGGCTCTTATTCATTTATCCGGGTTTTGTTTTCCTTTGTCTCTTGGGATGATGCTGAACTAGTTAAGGAAATTGTCAATGAAGTGCTCAAGAGATTGGTTAAACAGTCAATTAACACAAAAGGGCTCGTTGGAATTGATGAAAAAATTGCAGCTATAGAATCACTGATAAGAGAGGAGCCAGAGCAAACCAGACTCATTGGAATTTGGGGTATGGGAGGTGTTGGCAAGACAACTCTTGCAGAAGAAGTATTTAATAAACTACAATCTGAATATGAAGGTTCCTATTTTGTAGCCAGTGAAACAGATCGATCAAACAAACACGAGCTAATTTCCTTGAAGGAAAAAATTGATAATTCTGTGGCTTTTGAGTTGGGAAGGTTGAAAGACAAAGCTCTCATAACTATATCTGATGATAATACTGTATCTATACATGATAGTTTACAAGAAATGGCGTGGGAGATTGTTCGTCAAGAGTCTGTTGAGCACCCTGGAAATCGCAGTCGGTTGTGGGAACTAAATGACATTTGTGAAGCATTGAAAAATGACAAGGTTAAAGAGGCTATTAGAAGTATAAGAATTCACTTGCCAACAATTAAGGAGCAAAAGTTAGTGCCTCAAATTCTGGAAATTAATATGAGCAAACTAAAATTTCTGGAAGTTTTTGTATGTGATCGCTATGATGAACTTACTCTTCTTAAAGGGCCACAATTTTTGGCAACTGAGCTAAGATTTCTTTCTTGGTATCAATACCCTCTGAAATCCTTGCCAGAGAATTTTTCTGCAGAGAAACTTGTAATATTGAAGTTGAGAAATGGCAAAATGGAAAAACTTTGGGATGGAGTGAAGAATATGGTGAATTTAAAACAAGTTGACCTCAGTCGATCACAAAATTTAAAGAAGCTACCAGATCTATCAAAAGCCACAAATCTAGAAGTCCTTCTTCTTATGAGTTGTTCTTCGTTGACTAGTGTTCATCCATCTATTTTCTCTCTGCCCAAACTTGTGAAATTGGACCTTCTTTGTTGCACATCTCTCACCACACTCGGTAGCAGTTCCTCTTCATGCAACCTCAGTTTTCTCAACCTTGGTAGGTGTACCAATCTAAGGAAGTTCTTGCTGATATCAGAGAATATAAAAAAGCTTAGATTAGGGAACACCATGGTGAAAGAATTGCCCTCATCCATCAGCAATTTTAATCAACTGCTACACCTTGACATAAGCTTTTGCAGCAAGCTTCGAACTATTCCAAAGCTTCCCCTATCACTTGAAACTCTGAAAGCTAGAGAATGCCAATCTTTGAAGACTATATTGTTTCCTTCAACGGCTGTTGAACAATTAAAGGAGAACAGGAAAGAGATTCGGTTCTGGAAATGCATGAACTTGGATAATCAGACTCTGGTGGGTATTGGGTTGAATGTTCAAATCAATGTGATGAATTATGCAAACCAGCACATATCCACAGCAAGTCACAATCATGTTGAACATTGTGATGATGATAATTGTGATTCTTATTCAGGTGTTTACGTGTATCCAGGAAGTAGAGTTCCAAAGTGGTTGGAGTATAAGACAAGAAAGGATTCTATAATTATTGATCTCTCTTCTGCTCCACCTTCCCCTCTCATTGGCTTCATTTTCTGCTTTGTTCTTGGTGAGTACCATAACGCAGATGTTGATAGATTTGAAGTAGTGATCACTATTGATGGCGAGGACGAAGGTAACAGTATCAGTGTTCCGATTTACATAGATTATGGCTATGAGAAAACTGAATCAGATCACGTTTGTGTGATAAATGATGCTGACCTGCTAAAAGCAATAGTGGATCTTGTGCTGAGGAGGTTGACGAAATCCCTGGTTAACTCAAAAGGGCTTGTTGGAATTGATAAAAGAATTGCAGATGTAGAATCATTGATACACAGAGAGTCAGAAAAAGCCCGTCTGATTGGACTTTGGGGTATGGGTGGTATTGGCAAGACAACTCTTGCAGAAGAAGTATATAACAAACTACGGTCTAAATATGAAGGTTGTTATTTTTTGGCCAATGTAAGAGAACAGTTAAGCAGAGAAGGAAAAATTTGTTTGAGGAAAGAAATTTTTTCTGCACTGTTAGGAGATGTGAAAATAGATACGCCAAATTCACTGCCAGAATATATTGTTAGGAGAATAAGTCAAATGAAGGTTCTCATTGTCCTTGATGATGTGAATGATTCAGATCACATAGGAGATCTTTTAGGAGCTCTTGACAATTTTGGATCAGGCAGTTGCATAATTGTAACAACCAGAGATGAACAAGTGCTTAAAGCTAACAAAACTGATGAGATATACCATCTTAGAGAATTCACTTCAGATGAGGCTCTTGAACTTTTCAATCTGAATGCCTTTAACCAAAGAGTTCATCAAAGGGAATACGATGAACTCTCAAAAAGAATTGTACATTATGCCAAAGGCCTTCCACTAATTCTGAAAGTTTTGGCTCATCGACTACATGGAAAGAATGAGGAAGTATGGGAAAGTGAGCTAGACAAGCTTAAAAACGTGCCTCCTACTAAAGTTTATGATGTTATAAAGCTGAGTTATGATGATTTAGATCGCAAAGAGAAAAACATTTTTCTTGATCTTGCATGTTTTTTTTGCACATCATTTGTGAAGATAACCACTGACTATCTAAAATATTTACTGAAAGATGGTGAAAGAGATAATTCAGTGGTTGTTTCACTAGAAAGACTTAAAGATAAAGCTCTTATAACATTTTCCCAAGATAATGTTGTATGTATGCATGACAGTATAAAAGAAATGGCTTGGGAGATTGTTCGGCAAGAGTCTCCTGAAGACCCTGGAAACCGCAGCCGGTTGTGGGATCCTGATGACATTTATGAAGCTTTTAAAAATGACAAGGTTAATGAAGCCATTAGAAGCATACGAATTAATTCGGTATTGCTTCGGTGGCAGGAGTGTGTGCCTCACATTGCTAAGATGAGCAGACTAAGATTCGTGGAAATATATGGGGCAGACTTTAGTCGCTGCAGACAACTTAGTGCTGAAGGGCAAGGACTTCAATTTTGGGGAACTGAAATTAGATTTCTTTCTTGGGTATGTTACCCTCTAAAATCCTTGCCAGACAAATTTTCTGGTGAAAAGCTTGTGATATTGAAATTGGAATTGGGTAGAATGGAAAAACTTTGGGATGGAGTGAAGAATCTGGTGAATTTAAAACAACTTGACCTCACAGACTCACATAGCTTGAAAGAGCTGCCAGATTTATCAAAAGCCAAAAATATTGAAGTACTGTGCCTCGGGAGTTGTTCCGGATTAACCAGGTTACCTTCATCCTTCGCCAACCATACACAATTGCTATATCTAGACATAAGCCATTGCCCGAAAATTTTAACAATACCAGAGCTTCCTCTTTCCCTAGAAACTCTATATGCTGGAAGCTGCAAATCATTAAAGACTGTATTATTCCATTCTACGGCAGTTGAACAAACAAAGGAAAACAGAAAGCAGGTTTTGTTCGACGGTTGCATGAACTTGGATGAACCTTCTCTAGAGGCTATTGGGTTGAATGTACGAATCAACGTTATGAAATTTGCAAACCAACACCTATCTGCGCCAAAGCAAGATGATTTTCAAAATTACAACGATTATGACAAGAATTTTTATTCTTATCAAGCCTTTTACGGGTATCCAGGAAGCAGTATTCCAGAATGGTTGGAGTACAAGTCAAAAAAATATTCTGTAATTATAGATCTCTCTTCTGCTCCACCTTCCCCTGTATATGGCTTCATTTTGTGCTTCGTACTCCTTGGAGAAGTTGATAAGATTAGATTTAACATCGTTATAAGTGATTGTGAGGGTAAAGGTGTTATGGAAAGATTTAGAATGAAACTATTTAGGAATACGTGGAGATCTATTGAATCGCAGAAAGTGGTTGTGATGTACGACCAAAGATGTTCCAACTTCCTAAACAACATAGCTAAGAGACTCACAAGGTTTAAAATCATGGTTAGAAGGGCGACTAAAGACGATGGCAGCTTTTATAGTAAGAGGATTATGGTTGGATTGAGTGGATTCGGGCTGAAAACTCCAACTAATGAAGGCTGTGTACCTTCCCCTGCTTGTCAGACTGCAGAGACCATTGGCTATATATCTTGCAGAGAAACTTGTAATTTTGATATTGAGAAATGGCAGAATGGACAAATTTTGGGATGGAGTGAAAATATGATGAATTTAAAACAAGTTGACCTTAGTCGATCCCAAAATTTAAAGAGGCTACCAGATCAATCAAAAGCCACAAATCTAGAAATGTTTACGTGTACCCAGGAAGTAGAGTTCCAAAGTGGTTATAAGACAAGAAAGGATTCTATAATTATTGATCTCTCTTCTGCACCTCTTTCCCCTCTCATTGGTAAGTACCATAACACAGATGTTGATAGATTTGAAGTGATGATCACTATTGAAGGCGAGGACGAAGGTAAAAGTATCACTGTTCCGATTTACATAGATTATGGAAATGATGCTGACCTGCTAAAAGCAATAGTGGATCTTGTGCTGAGGAGGTTGACGAAATCCCTGGTTAACTCAAAAGGGCTTGTTGGAATTGATAAAAGAATTGCAGATGTAGAATCATTGATACACAGAGAGTCAGAAAAAGCCCGTCTAATTGGACTTTGGGGTATGGGTGGTATTGGCAAGACAACCCTTGCAGAAGAAGTATATAACAAACTACAGTTTAAATATGAAGGTTGTTATTTTCTGGCCAATGTAAGAGAACAGTTAAGTAGAGATGGGAAAATTTGTTTGAGGAAAGAAATTTTTTCTGCACTGTTAGGAGATGTGAAAATTGACACGCCAAATTCACTGCCAGAATCTATTGTTAGGAGAATTCGTCGAATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCACATAGAAGATCTGTTAGGAATTCTTGACAATTTTAGATCAGGCAGCAGCATAATTGTAACAACCAGAGATGAGCAAGTGCTTAAAGCTAATAAAGCTGATGAGATATACCATCTTAGAGAATTCACTTCGAATGAAGCTCTTGAACTTTTCAATTTGAATGCCTTTAACCAAAGTGTTCATCAAAGGCAGTACAATAAACTCTCAAAAAGGATTGTTCAATATGCCAAAGGCCTTCCATTAATTCTGAAAGTTTTGGCTCATCGACTATATGGAAAGAACGAGGAAATATGGGAGAGTGAACTAGACAAGCTTAAAAAAATGCCTCCTACAAAAGTTTACGATGTTATAAAGCTGAGTTATGATGATTTAGATCGCAAAGAGAAACAGATTTTTCTTGATCTTGCATGTTTCTTTTGCATATCATTTCAGAAGATAACCATTGGCTATCTAAAATATTTACTGAAAGATGGTGAAAGAGATAATTCAGTGGTTGTTTCACTAGAAAGACTTAAAGATAAAGCTCTTATAACATTTTCCCAAGATAATGTTGTATATATCCATGACAGTATAAAAGAAATGGCTTGGGAGATTGTTCGGCAAGAGTCTCCTGAAGACCCTGGAAACCGCAGCCGGTTGTGGGCTATGGATGACATTTATGAAGCTTTTAAAAATGACAAGGTTAGTGAGGCCACTAGAAGCATACAAATTAACTTGGTATTGCTTCCGTGGCCGGAGTTTGTGTCTCACATTGCTAAGATGAGCAGACTAAGATTCGTGGAAATAAATGGGGCAGACTTTAGTCACTGCAGACAACTTAGTGCTGAAGGGCAAGGACTTCAATTTTGGGGAACTGAAATTAGATTTCTTTCTTGGGTATGTTACCCTCTAAAATCCTTGCCAGACAAATTTTCTGGTGAAAAGCTTGTGATATTGAAATTGAAAGTGGGTAGAATGGAAAAACTTTGGGATGGAGTGAAGAATCTGGTGAATTTAAAACAACTTGACCTCACAGACTCATATAGCTTGAAAGAGCTGCCAGATTTATCAAAAGCCACAAATATTGAAGTACTGCGCCTCGTGTGTTGTGTCAGATTAACCAGGTTACCTTCATCCTTCGCAAGCAATACACAACTGTTACATCTAAACGTAACCGGTTGCGAAGAAATTCGAACAATACCAGAGCTTCCTCTTTCCCTACAAACTCTACATGCTAGAAACTGCGTATCATTGAAGACTGTATTATTCAATTCTACGGCAGTTGAACAAACAAAGGAAAACAGAAAGCAGGTTTTGTTCGCCGGTTGCAAGAACTTGGATGAACCTTCTCTAGAGGCTATTGGGTTGAATGCACGAATCAACGTGATGAAATTTGCAAACCAACACCTATCTGCGCCAAAGCAAGATGATTTTCAAAATTACAACGATTATGAAAAGAATTATGATTCTTATCAAGCCTTTTACGAGTATCCAGGAAGCAGTGTTCCAGAATGGTTGGAGTACAAGTCAAAAAAAAATTCTGTAATTATAGATCTCTCTTCTGCTCCACCTTCCCCCGTATATGGCTTCATTTTGTGCTTTGTACCCTTTGAAGACGTTTATGATATTGAATTTAACATCGTTATAAGTGATTGTGAGGGTAAAGGTATAACGGACAGAGTTAGAATGAAACTAAATCATGGGTTTGCGTTTGTTCGATTGCCTAAAGTGGTTGTGATGTACGACCAAAGATGTTCCGACTTCCTAAACAACATAGCCACCAGTCTGACAAGGTTTGAAATCATGGCATGGCAGAGAAGAGGCATTGGCATACCTTGTAGTCTGTCTTCATCGATCTTTCAATTACGTGGATTCGGGGTGAGCATAATAAGAACATGGACGTATAGCAGTTTCATGCAACAAATCAAAGAGGCAAGGTGGCTGATACTGATTGCTTTCCTGGACGTTCGCATCCGTTATGATTGTTGCGTGCAGTTGCTCATCTTCCCCTACATGCATTTGTCAATGCAAGTTGACCACACCACCTCCATCTAA 6978 0.3802 MLNFCGSYSFIRVLFSFVSWDDAELVKEIVNEVLKRLVKQSINTKGLVGIDEKIAAIESLIREEPEQTRLIGIWGMGGVGKTTLAEEVFNKLQSEYEGSYFVASETDRSNKHELISLKEKIDNSVAFELGRLKDKALITISDDNTVSIHDSLQEMAWEIVRQESVEHPGNRSRLWELNDICEALKNDKVKEAIRSIRIHLPTIKEQKLVPQILEINMSKLKFLEVFVCDRYDELTLLKGPQFLATELRFLSWYQYPLKSLPENFSAEKLVILKLRNGKMEKLWDGVKNMVNLKQVDLSRSQNLKKLPDLSKATNLEVLLLMSCSSLTSVHPSIFSLPKLVKLDLLCCTSLTTLGSSSSSCNLSFLNLGRCTNLRKFLLISENIKKLRLGNTMVKELPSSISNFNQLLHLDISFCSKLRTIPKLPLSLETLKARECQSLKTILFPSTAVEQLKENRKEIRFWKCMNLDNQTLVGIGLNVQINVMNYANQHISTASHNHVEHCDDDNCDSYSGVYVYPGSRVPKWLEYKTRKDSIIIDLSSAPPSPLIGFIFCFVLGEYHNADVDRFEVVITIDGEDEGNSISVPIYIDYGYEKTESDHVCVINDADLLKAIVDLVLRRLTKSLVNSKGLVGIDKRIADVESLIHRESEKARLIGLWGMGGIGKTTLAEEVYNKLRSKYEGCYFLANVREQLSREGKICLRKEIFSALLGDVKIDTPNSLPEYIVRRISQMKVLIVLDDVNDSDHIGDLLGALDNFGSGSCIIVTTRDEQVLKANKTDEIYHLREFTSDEALELFNLNAFNQRVHQREYDELSKRIVHYAKGLPLILKVLAHRLHGKNEEVWESELDKLKNVPPTKVYDVIKLSYDDLDRKEKNIFLDLACFFCTSFVKITTDYLKYLLKDGERDNSVVVSLERLKDKALITFSQDNVVCMHDSIKEMAWEIVRQESPEDPGNRSRLWDPDDIYEAFKNDKVNEAIRSIRINSVLLRWQECVPHIAKMSRLRFVEIYGADFSRCRQLSAEGQGLQFWGTEIRFLSWVCYPLKSLPDKFSGEKLVILKLELGRMEKLWDGVKNLVNLKQLDLTDSHSLKELPDLSKAKNIEVLCLGSCSGLTRLPSSFANHTQLLYLDISHCPKILTIPELPLSLETLYAGSCKSLKTVLFHSTAVEQTKENRKQVLFDGCMNLDEPSLEAIGLNVRINVMKFANQHLSAPKQDDFQNYNDYDKNFYSYQAFYGYPGSSIPEWLEYKSKKYSVIIDLSSAPPSPVYGFILCFVLLGEVDKIRFNIVISDCEGKGVMERFRMKLFRNTWRSIESQKVVVMYDQRCSNFLNNIAKRLTRFKIMVRRATKDDGSFYSKRIMVGLSGFGLKTPTNEGCVPSPACQTAETIGYISCRETCNFDIEKWQNGQILGWSENMMNLKQVDLSRSQNLKRLPDQSKATNLEMFTCTQEVEFQSGYKTRKDSIIIDLSSAPLSPLIGKYHNTDVDRFEVMITIEGEDEGKSITVPIYIDYGNDADLLKAIVDLVLRRLTKSLVNSKGLVGIDKRIADVESLIHRESEKARLIGLWGMGGIGKTTLAEEVYNKLQFKYEGCYFLANVREQLSRDGKICLRKEIFSALLGDVKIDTPNSLPESIVRRIRRMKVLIVLDDVNDSDHIEDLLGILDNFRSGSSIIVTTRDEQVLKANKADEIYHLREFTSNEALELFNLNAFNQSVHQRQYNKLSKRIVQYAKGLPLILKVLAHRLYGKNEEIWESELDKLKKMPPTKVYDVIKLSYDDLDRKEKQIFLDLACFFCISFQKITIGYLKYLLKDGERDNSVVVSLERLKDKALITFSQDNVVYIHDSIKEMAWEIVRQESPEDPGNRSRLWAMDDIYEAFKNDKVSEATRSIQINLVLLPWPEFVSHIAKMSRLRFVEINGADFSHCRQLSAEGQGLQFWGTEIRFLSWVCYPLKSLPDKFSGEKLVILKLKVGRMEKLWDGVKNLVNLKQLDLTDSYSLKELPDLSKATNIEVLRLVCCVRLTRLPSSFASNTQLLHLNVTGCEEIRTIPELPLSLQTLHARNCVSLKTVLFNSTAVEQTKENRKQVLFAGCKNLDEPSLEAIGLNARINVMKFANQHLSAPKQDDFQNYNDYEKNYDSYQAFYEYPGSSVPEWLEYKSKKNSVIIDLSSAPPSPVYGFILCFVPFEDVYDIEFNIVISDCEGKGITDRVRMKLNHGFAFVRLPKVVVMYDQRCSDFLNNIATSLTRFEIMAWQRRGIGIPCSLSSSIFQLRGFGVSIIRTWTYSSFMQQIKEARWLILIAFLDVRIRYDCCVQLLIFPYMHLSMQVDHTTSI 2325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00326 2325 Pfam NB-ARC domain 56 141 IPR002182 GO:0043531
Vimu10g00326 2325 Pfam NB-ARC domain 1546 1756 IPR002182 GO:0043531
Vimu10g00326 2325 Pfam NB-ARC domain 640 850 IPR002182 GO:0043531
Vimu10g00326 2325 Gene3D - 784 867 IPR042197 -
Vimu10g00326 2325 Gene3D - 1690 1773 IPR042197 -
Vimu10g00326 2325 Gene3D Ribonuclease Inhibitor 197 503 IPR032675 -
Vimu10g00326 2325 PRINTS Disease resistance protein signature 818 832 - -
Vimu10g00326 2325 PRINTS Disease resistance protein signature 1069 1085 - -
Vimu10g00326 2325 PRINTS Disease resistance protein signature 651 666 - -
Vimu10g00326 2325 PRINTS Disease resistance protein signature 725 739 - -
Vimu10g00326 2325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 119 IPR027417 -
Vimu10g00326 2325 SUPERFAMILY L domain-like 929 1439 - -
Vimu10g00326 2325 Pfam Leucine Rich Repeat 268 287 IPR011713 -
Vimu10g00326 2325 SUPERFAMILY L domain-like 162 486 - -
Vimu10g00326 2325 SMART AAA_5 1554 1690 IPR003593 GO:0016887
Vimu10g00326 2325 SMART AAA_5 648 796 IPR003593 GO:0016887
Vimu10g00326 2325 SMART AAA_5 67 355 IPR003593 GO:0016887
Vimu10g00326 2325 SUPERFAMILY L domain-like 1847 2061 - -
Vimu10g00326 2325 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 121 IPR044974 GO:0006952
Vimu10g00326 2325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 877 IPR027417 -
Vimu10g00326 2325 Gene3D Ribonuclease Inhibitor 975 1174 IPR032675 -
Vimu10g00326 2325 Gene3D Ribonuclease Inhibitor 1873 2080 IPR032675 -
Vimu10g00326 2325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1522 1783 IPR027417 -
Vimu10g00326 2325 Gene3D - 26 196 IPR027417 -
Vimu10g00326 2325 Gene3D - 616 778 IPR027417 -
Vimu10g00326 2325 Gene3D - 1522 1684 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00326 Vimu-Chr10 2222505 2245894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00326 15 97 WRKY Transcription Factor Family AT4G12020 39.759 7.17e-10 63.2