Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00324 ATGGCTGGGGACAAAGGGAGCATCACTCTCGAAGAGATCAGGAATGAAACTGTTGATCTGGAACGTATTCCGATCGAGGAAGTGTTTGAGCAATTGAAATGTACCAGGGAAGGTTTGTCCTCCACGGAAGGAGAGAACAGGCTTCAAATATTTGGACCCAACAAACTAGAAGAAAAAAAGGAAAGCAAGTTTCTGAAATTTCTTGGGTTCATGTGGAATCCACTTTCATGGGTCATGGAGGCTGCAGCTATTATGGCAATTGCTCTTGCAAATGGTGAAGGGAAGCCTCCAGATTGGCAAGATTTTGTGGGTATTGTGTGTTTGTTGCTGATCAACTCCACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCTAAAACAAAGGTTCTAAGAGATGGTAAATGGAGTGAGCAAGAAGCTGCAATTCTTGTTCCGGGAGACATAATCAGCATCAAGCTAGGCGACATTATTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTCTTATGGTTGATCAAGCAGCACTGACTGGGGAGTCACTTCCAGTTACTAAGCATCCAGGGCAAGAAGTGTTCTCTGGATCAACTTGTAAACAAGGAGAGATTGAAGCCGTTGTGATTGCCACTGGTGTGCACACATTCTTTGGAAAGGCAGCACACTTGGTGGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTTACTGCAATTGGGAACTTCTGCATCTGTTCCATTGCGGTTGGTATGCTGGCTGAGATCATAGTGATGTACCCAATTCAGCACCGCAAGTACAGGGATGGAATTGACAACCTGTTGGTTCTCTTGATTGGAGGTATCCCCATTGCTATGCCTACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAAGCTCTCTCAGCAAGGTGCCATCACCAAGAGAATGACTGCCATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGACAAGACAGGAACACTCACCCTCAACAAACTCACTGTTGACAAGAACTTAGTTGAGGTCTTTGCCAAGGGTGTCGACAAGGATCATGTCATCCTTCTTGCTGCCAGGGCAGCCAGGACTGAAAACCAGGATGCCATAGATGCTGCCATTGTTGGAATGCTGGCTGATCCTAAAGAGGCAAGGGCTGGCATAAGAGAGGTGCACTTTCTACCATTCAACCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCGGATGGAAATTGGCACAGGGCAAGCAAAGGTGCTCCTGAGCAGATTATGTCCCTGTGTAACCTCAGGGAAGATGCTAAGAAGAAGGTCCATGCTATCATTGACAAGTTTGCAGAAAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAGAACAAAAGAAAGTTCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTTGATCCCCCAAGACATGACAGTGCTGAAACCATTCGCCGAGCTCTTAACCTTGGTGTAAATGTTAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAAACAGGAAGGAGACTTGGAATGGGAACAAATATGTATCCATCTGCTTCATTGCTTGGACAAGACAAGGATGCAAGTATTGCCGCACTCCCTGTAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGTGTTTTTCCAGAGCACAAATATGAAATCGTGAAGAAGTTGCAAGAGAGGAAGCACATCTGTGGAATGACCGGCGATGGTGTCAATGACGCTCCTGCACTGAAGAAGGCTGATATTGGAATTGCTGTTGCCGATGCCACTGATGCTGCAAGAAGTGCTTCTGACATTGTCTTGACTGAACCTGGATTGAGTGTTATTATAAGTGCAGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAGAACTATACGTTTGGCTTCATGTTCATTGCACTGATCTGGAAATTTGACTTCTCCCCTTTTATGGTTTTGATTATTGCTATCCTGAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTTAAACCATCTCCCCTACCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGGATTGTGCTTGGAGGTTACTTGGCGCTGATGACTGTTATATTCTTCTGGGCAATGAAAGAGACTACTTTCTTCCCTGATAAATTTGGAGTTAGACATATTCATGACAGTCCAGATGAAATGACAGCTGCTTTGTATCTACAAGTCAGTATAGTTAGCCAGGCTTTGATATTTGTAACCCGTTCACGCAGCTGGTCCTTTATTGAACGCCCTGGAATGTTGCTAGTGAGCGCTTTCGTTATTGCTCAGCTGATTGCTACATTACTAGCAGTGTATGCAAACTGGGGCTTTGCAAGGATCAAAGGAGTTGGGTGGGGTTGGGCAGGAGTTATATGGCTCTACAGCATTGTCTTTTATGTCCCCCTTGACTTGATGAAGTTTGCCATCCGCTACATCTTGAGTGGCAAAGCTTGGTTGAATCTCCTAGAGAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAAGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAGAGGACCCTTCATGGACTTCAACCACCGGAAACTTCTAGCATCTTCAATGAGAAGAGCAGTTACAGAGAACTGTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTAAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAAGGTTTGGACATTGACACAATCCAGCAGCATTACACCATAGCAAAAGGGCCAAAATTCAATGCTTTAAAGGAACGGAGAGACAAGGATAAGGCCAAACTATTTATGCTTACTAGGTAG 2910 0.4502 MAGDKGSITLEEIRNETVDLERIPIEEVFEQLKCTREGLSSTEGENRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGEGKPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDKDHVILLAARAARTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMSLCNLREDAKKKVHAIIDKFAERGLRSLAVARQEVPERTKESSGAPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAMKETTFFPDKFGVRHIHDSPDEMTAALYLQVSIVSQALIFVTRSRSWSFIERPGMLLVSAFVIAQLIATLLAVYANWGFARIKGVGWGWAGVIWLYSIVFYVPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTIAKGPKFNALKERRDKDKAKLFMLTR 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00324 969 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Vimu10g00324 969 Gene3D - 98 808 - -
Vimu10g00324 969 Gene3D - 136 220 - -
Vimu10g00324 969 FunFam Plasma membrane ATPase 484 640 - -
Vimu10g00324 969 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Vimu10g00324 969 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 840 IPR023298 -
Vimu10g00324 969 Gene3D - 330 629 IPR023214 -
Vimu10g00324 969 SFLD p-type atpase 315 643 IPR044492 -
Vimu10g00324 969 FunFam Plasma membrane ATPase 136 220 - -
Vimu10g00324 969 Pfam E1-E2 ATPase 135 312 - -
Vimu10g00324 969 NCBIfam HAD-IC family P-type ATPase 567 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 NCBIfam HAD-IC family P-type ATPase 105 353 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 SUPERFAMILY HAD-like 329 639 IPR036412 -
Vimu10g00324 969 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Vimu10g00324 969 Gene3D - 893 944 - -
Vimu10g00324 969 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Vimu10g00324 969 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Vimu10g00324 969 Coils Coil 895 915 - -
Vimu10g00324 969 FunFam Plasma membrane ATPase 345 492 - -
Vimu10g00324 969 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 799 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g00324 969 CDD P-type_ATPase_H 38 834 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g00324 969 SFLD C1.7: P-type atpase like 315 643 - -
Vimu10g00324 969 Gene3D - 345 492 IPR023299 GO:0000166
Vimu10g00324 969 PANTHER CALCIUM-TRANSPORTING ATPASE 22 876 - -
Vimu10g00324 969 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 PRINTS H+-transporting ATPase (proton pump) signature 753 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Vimu10g00324 969 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00324 Vimu-Chr10 2213301 2220467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00324 9 944 Primary Pumps ATPases AT4G30190 83.571 0.0 1623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00324 K01535 - gmx:100804422 1768.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01352 7 12884788 12891591 Vimu10g00324 10 2213301 2220467 PCT