Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00321 ATGGAGTGGGACAGTGATTCCGATCTTAGCGGAGACGATGACGCTTCCTTTATGCTCAACGATGATGACGATTTCGCCGGACCCCTCCCCTTCCCCGTTCTCCAGACTGCGCCCTGCGGCTTCGTCGTCACCGACGCGCTTGAGCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTCACCGGTTATAGTGCAGAAGAAGTGCTCGGTCGCAATTGGTTAGTGCCTCTGTTGAGATTTTGCATCATTAGGTTTAGGTTTTCGTGCCGAGGTCCATTTGCTAAGAGAAGGCATCCACTGGTAGACTCAACTGTTGTTTCCGAAATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGTCTGACACCTATATACGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTCCCAGGTTCTAAGGTTAAGGAATATACTAAATCATCAGATCAATTTCGTTTGGTGCTTTCCTCATTGAATCCTCTTCATGTTGGGGACCGTAATGTTACTCGTGGAGTTTGTGGAATATTGCAATTAAGTGATGAGGTATTGTCTCTTAAGATACTTGCTCGCTTGACTCCAAGAGATATTGCATCTGTCAGTTCTGTTTGTAGGCAGTTCTATGAGCTAACAAAAAGTGAAAACCTTTGGAGAATGGTGTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCTGCAGCTTGGAGGAAACTGACTGTTGGAGGTGTGGTTGAACCTTCGCGCTGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGTGTTAACATGCAACCTATGAATGATACTTTTGTACTGGATCTGAATTCAAGTAATCCGGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTAATTTAGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATCTCTGGACTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCATGTACACTTGATGGTACTAAGTTGATAGTTTCGGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCAATGGAGAAACCTGTCTGGAGGGAGATACCAGTAACATGGACTCCACCTTCGCGCCTGGGGCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGAGGTCTGGCCAAGAGTGGGCCCCTTCGGTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAACCATGTTGGAGGTCTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCCCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTTGACCCGACTGACGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGGCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTGGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTTTCCTTGGCATGCTCTGTTATCTAA 1866 0.4775 MEWDSDSDLSGDDDASFMLNDDDDFAGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYSAEEVLGRNWLVPLLRFCIIRFRFSCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSKVKEYTKSSDQFRLVLSSLNPLHVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVSSVCRQFYELTKSENLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGVVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRSVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00321 621 SUPERFAMILY PYP-like sensor domain (PAS domain) 34 158 IPR035965 -
Vimu10g00321 621 CDD PAS 37 150 IPR000014 -
Vimu10g00321 621 SUPERFAMILY Galactose oxidase, central domain 292 606 IPR011043 -
Vimu10g00321 621 CDD F-box_AtADO-like 208 254 - -
Vimu10g00321 621 Gene3D - 284 485 IPR015915 GO:0005515
Vimu10g00321 621 Pfam Galactose oxidase, central domain 305 355 - -
Vimu10g00321 621 SUPERFAMILY F-box domain 201 270 IPR036047 GO:0005515
Vimu10g00321 621 FunFam Adagio protein 1 31 169 - -
Vimu10g00321 621 FunFam Putative LOV domain-containing protein 282 486 - -
Vimu10g00321 621 ProSiteProfiles F-box domain profile. 220 253 IPR001810 GO:0005515
Vimu10g00321 621 FunFam Putative LOV domain-containing protein 487 620 - -
Vimu10g00321 621 Pfam Kelch motif 462 513 IPR011498 GO:0005515
Vimu10g00321 621 Pfam Kelch motif 529 576 IPR011498 GO:0005515
Vimu10g00321 621 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 617 - -
Vimu10g00321 621 Pfam PAS domain 38 158 IPR000014 -
Vimu10g00321 621 Gene3D - 486 619 IPR015915 GO:0005515
Vimu10g00321 621 ProSiteProfiles PAS repeat profile. 33 81 IPR000014 -
Vimu10g00321 621 Pfam Galactose oxidase, central domain 369 416 - -
Vimu10g00321 621 Gene3D PAS domain 31 169 - -
Vimu10g00321 621 Pfam F-box-like 217 255 IPR001810 GO:0005515
Vimu10g00321 621 Gene3D - 205 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00321 Vimu-Chr10 2140989 2144907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00321 33 159 AGC Kinase Gene Family AT5G58140 29.688 2.19e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00321 K12115 - gmx:100802828 1133.24