Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00320 ATGGAGTGGGACAGCAATTCTGATCTCAGCGGCGACGACGACGCCGCTTCCTTCCTCCTCAACGACGACGACGACGACGTCGTCGGGCCCCTCCCCTTTCCCATCCTCCAAACCGCGCCCTGCGGCTTCGTCGTCACCGATGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTCACCGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGGTTAGTGCCTCTCTCGATATTTCTCCTCCTTAGGTTTAGGTTTTTGGTTCGCATTTTCGCTCTCCTTCGAAACCCTAGGAAATCGTTGGAACTTAGATGCTCATCGTACTGA 345 0.5623 MEWDSNSDLSGDDDAASFLLNDDDDDVVGPLPFPILQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNWLVPLSIFLLLRFRFLVRIFALLRNPRKSLELRCSSY 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00320 114 NCBIfam PAS domain S-box protein 35 79 IPR000014 -
Vimu10g00320 114 ProSiteProfiles PAS repeat profile. 35 82 IPR000014 -
Vimu10g00320 114 CDD PAS 39 79 IPR000014 -
Vimu10g00320 114 PANTHER PROTEIN TWIN LOV 1 43 78 - -
Vimu10g00320 114 SUPERFAMILY PYP-like sensor domain (PAS domain) 35 80 IPR035965 -
Vimu10g00320 114 Pfam PAS fold 35 78 IPR013767 GO:0006355
Vimu10g00320 114 Gene3D PAS domain 33 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00320 Vimu-Chr10 2138463 2138807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00320 36 77 AGC Kinase Gene Family AT3G45780 52.381 5.55e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00320 K12115 - gmx:100802828 149.058