Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00317 ATGGAAAGGGAGAAGCCAATCAGATTCACTGATCAACAACTAAGAATTGCAACTGATAACTACTCTAACTTGTTGGGGTCAGGAGGTTTTGGAACAGTTTATAAGGGAATTTTCAGTAATGGGACTATTGTTGCAGTGAAGGTTCTGCGAGGGACTTCAGACAAGAAAATCGAGGAGCAGTTTATGGCAGAAGTGGGAACGATTGGCAGAATTCATCATTTCAATCTTGTTAGACTCTATGGATTTTGCTTTGAAGAAAACCTGATAGCACTAGTGTATGAGTACATGGGTAATGGCTCTCTTGATAGGTATTTGTTCCACGAAAAGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTGGGAACAGCTAGAGGCATTGCTTATTTGCATGAGGAGTGCCAACACAGAATAATCCATTACGACATAAAACCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTCGGTTTAGCCAAACTCTGCAACAGGGACAATACTCATATAACCATGACTGGAGGCAGAGGAACTCCAGGTTATGCTGCACCTGAGCTTTGGATGCCCTTTCCCATAACTCCCAAGTGTGATGTTTATAGTTTTGGCATGCTGCTGTTTGAAATCATAGGCAGAAGAAGAAATATTGATATTAAACTTGCTGAAAGCCAAGAGTGGTTTCCAATATGGGTTTGGAAAAAATTTGATACTGGACAATTGGGGGAGTTGATGACAACCTGTGGGATAGAAGAGAAAGATAAGAAGATTGCAGAAAGAATGATTAAGATAGCTTTGTGGTGTGTTCAGTATAGGCCAGAAATAAGGCCAATAATGAGTGTTGTGGTGAAAATGCTGGAAGGTTCAGTGGAAGTTCCAGAACCTAACAACCCTTTTCAGCATTTCATGGGTGGGATTACCATTGCTCATCCAGTTCCAATGTCACAGACCTATAATACAGCAAGTATTTCATCTGGTTCTTCTGTTATGGTAACAAACTCCAGCATTGTATGTGCTACTCCTATTATGAGGAAGTACGGCATTGAATTAGCCTCTAGCAATGTGTGA 1077 0.4039 MEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGTSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFEENLIALVYEYMGNGSLDRYLFHEKKTLGYEKLHEIAVGTARGIAYLHEECQHRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPITPKCDVYSFGMLLFEIIGRRRNIDIKLAESQEWFPIWVWKKFDTGQLGELMTTCGIEEKDKKIAERMIKIALWCVQYRPEIRPIMSVVVKMLEGSVEVPEPNNPFQHFMGGITIAHPVPMSQTYNTASISSGSSVMVTNSSIVCATPIMRKYGIELASSNV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00317 358 FunFam serine/threonine-protein kinase PBS1-like 1 95 - -
Vimu10g00317 358 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Vimu10g00317 358 Gene3D Transferase(Phosphotransferase) domain 1 96 300 - -
Vimu10g00317 358 ProSiteProfiles Protein kinase domain profile. 19 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00317 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vimu10g00317 358 SMART serkin_6 19 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00317 358 Pfam Protein kinase domain 23 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00317 358 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vimu10g00317 358 CDD STKc_IRAK 25 291 - -
Vimu10g00317 358 FunFam Putative receptor-like protein kinase 96 297 - -
Vimu10g00317 358 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Vimu10g00317 358 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00317 Vimu-Chr10 2117577 2118653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00317 8 302 Receptor kinase-like Gene Family AT5G38280 41.914 1.10e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vimu10g00317 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00317 - - gmx:100803355 671.774