Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00316 ATGGACGCTGGGGGTCTCATAGCTGTAGCTGTTTTGTTAGTGTGGTTCGTGATTCTCTGCCTGTTTTGTTTTTGTAAAGCATCCAAAAGAGAAACTAATGGATTGCTGGAAATGAATTTTGTCCACATTGAGAATATTTTGAAGAACATGGAAAGAGAAAAGCCAATCAGGTTTACTGGTGAGCTGCTAAGGGTTGCAACAGATAATTATTCTACATCATTGGGGTCAGGAGGTTTTGGAGAAGTTTATAAAGGAAATTTAAGTGACGGAACAACAGTGGCAGTGAAGGTTCTACGTGCAAATTCTGATAAGAGAATTAAGGAACAGTTTATGGCAGAAGTGGGTACAATTGGAAAAGTTCACCATTTCAACCTTGTTAAGTTGTATGGATTTTGCTTTGAGAAAGACCTGATAGCACTGGTTTATGAGTACATGAGGAATGGATCTCTCGACAAGTATCTGTTTCACGAAAACAAGACTCTGGGATACGAAAAGCTTCATGAGATTGCAGTTGGAACAGCCAGAGGCATTGCATACTTGCATGAAGATTGTGAACAAAGAATAGTCCACTATGACATAAAACCAGGAAATATTCTTTTGGACAAGAACTTCAATCCCAAAGTTGCTGATTTTGGATTAGCTAAACTCTGCAACAGGGACAATACTCATATAACAATGACAGGAGGTAGGGGCACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTGACTCACAAGTGTGATGTTTATAGCTTTGGAATGCTGTTATTCGAAATCATTGGCAGGAGAAGAAACCTTGACATTAACCTTCCCCAAAGCGAAGAGTGGTTTCCAGTATGGGCTTGGAAAAGATTTGAGGCTGGAGAATTGGAAGTGTTAATGAATGCTTGCAAGATTGAGGAGAGGCATAAAAAAATGGCAGAAAGAATGGTGAAGGTAGCTTTGTTTTGTGTTCAGTATAGGCCAGAAACAAGGCCAATTATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTTCTAAACCATTTAACCCGTTTCAGCACATGATAGAAGGAACTTTTAGGGGTAATTCTTCTGTCCATGCATCCGGAACTGATGTAAATACAAGTATCACTACCACTTCTTCTTTTATGGTAACTGAACCAGTTGTATATGACATTCCTGACATTCAATTGGCCTCTACCTGA 1203 0.3973 MDAGGLIAVAVLLVWFVILCLFCFCKASKRETNGLLEMNFVHIENILKNMEREKPIRFTGELLRVATDNYSTSLGSGGFGEVYKGNLSDGTTVAVKVLRANSDKRIKEQFMAEVGTIGKVHHFNLVKLYGFCFEKDLIALVYEYMRNGSLDKYLFHENKTLGYEKLHEIAVGTARGIAYLHEDCEQRIVHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDINLPQSEEWFPVWAWKRFEAGELEVLMNACKIEERHKKMAERMVKVALFCVQYRPETRPIMSDVVKMLEGSVEISKPFNPFQHMIEGTFRGNSSVHASGTDVNTSITTTSSFMVTEPVVYDIPDIQLAST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00316 400 SMART serkin_6 68 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00316 400 FunFam Putative receptor-like protein kinase 145 346 - -
Vimu10g00316 400 ProSiteProfiles Protein kinase domain profile. 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00316 400 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 347 - -
Vimu10g00316 400 CDD STKc_IRAK 74 340 - -
Vimu10g00316 400 Gene3D Transferase(Phosphotransferase) domain 1 145 349 - -
Vimu10g00316 400 SUPERFAMILY Protein kinase-like (PK-like) 51 339 IPR011009 -
Vimu10g00316 400 Gene3D Phosphorylase Kinase; domain 1 41 144 - -
Vimu10g00316 400 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Vimu10g00316 400 FunFam serine/threonine-protein kinase PBS1-like 41 144 - -
Vimu10g00316 400 Pfam Protein tyrosine and serine/threonine kinase 71 338 IPR001245 GO:0004672|GO:0006468
Vimu10g00316 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00316 Vimu-Chr10 2115087 2116437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00316 57 358 Receptor kinase-like Gene Family AT5G38280 43.226 5.27e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vimu10g00316 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00316 - - vun:114162625 696.041