Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00315 ATGAGTTTTCGATTTCCTTCTCCTTCTGACGATTTTCAGACTCAAGCGCAAAACGAGTTTGACCATTTTATGGAATGGACAGTAATAGCGTCTATTGCTATTATAGCAATAGTATATGCCATAATTCAATGCTTAAAGAAGGCAGGAGAAGCAATTCCTGCATACGCCCAGCTTCCTAGCACAGAGAATGATCATAAAGCATCAAATTCATTTCCTTCAACCAGAGAAATGGAAGTAGTAATAGCACCAGCTTCTACAGTTCAAAATTCGAAAACTGAGTTTGCAACAATGGAAAGATTCCTGAGCAACATCAACAAGGAGAAACCCATCAGATTCTCTCCTGAGGAACTGGATATAATTACATGGAACTACTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAAGGGATATTGTCCAATGGAGAGGATGTGGCTGTCAAAGTTATCAACAGTTTGGACATGGGAATGGAAGAGCAACTAAAAGCAGAAGTTGGAACCCTAGGAAGAACTTACCATGTCAATCTGGTGAGGCTTTATGGCTTCTGCTTCCACCGTGACAAGAGAGCTCTTGTTTATGAGTATGTAGAAAATGGGTCTTTGGACAAGCACTTGTTTGGCAGCCAGAATCAAGACATTGAGTTGGGGAAGCTTCTTGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAAGAGTGTCAAAAGAGAATAATTCATTACGATATTAAACCAGAGAATGTTCTTCTTGACATGAAGTTGGAACCAAAGGTTGCAGATTTTGGCCTAGCTAAGCTTTGCAGCAGAGAAAATAACGTTTCAGTAAACACACACTTTAGAGGAACAAGGGGATATGCTGCACCAGAAATGTGGAAGCCTTTTCCAGTGACTCACAAGTGTGACGTTTATAGTTTTGGTATTCTCCTGTTTGAAATGGTTGGGAGGAGAAGGCATTTTGATGATAACTACAGAGAATCACAACAGTGGCTTCCACAATGGACATGGGATATGTTTGAGAATAATGAATTATCTGTGATGCTTTCACTTTGTGGAATTGAGGAGAAAGACAAGGAGAAAGGTGAGAGAATGTCAAAGGTGGCTCTGTGGTGTGTTCAGTATTCACCTGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGCTAGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGTGTCTGTTAAGCCAAATCTCACTCAAAAAGAAAGTAGTACTGAAGATTCAGATGCTACCCAGTCATGGGAAACAACTTCAAACCCAGAATATGGCTCCAAAACCAAGCGCAATACATTTGAGATAGAAGAACTAGCTTAG 1365 0.4037 MSFRFPSPSDDFQTQAQNEFDHFMEWTVIASIAIIAIVYAIIQCLKKAGEAIPAYAQLPSTENDHKASNSFPSTREMEVVIAPASTVQNSKTEFATMERFLSNINKEKPIRFSPEELDIITWNYSTILGSGAFGVVYKGILSNGEDVAVKVINSLDMGMEEQLKAEVGTLGRTYHVNLVRLYGFCFHRDKRALVYEYVENGSLDKHLFGSQNQDIELGKLLEIAIGTAKGIAYLHEECQKRIIHYDIKPENVLLDMKLEPKVADFGLAKLCSRENNVSVNTHFRGTRGYAAPEMWKPFPVTHKCDVYSFGILLFEMVGRRRHFDDNYRESQQWLPQWTWDMFENNELSVMLSLCGIEEKDKEKGERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISPPPFPFQNLVSVKPNLTQKESSTEDSDATQSWETTSNPEYGSKTKRNTFEIEELA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00315 454 FunFam Putative receptor-like protein kinase 198 400 - -
Vimu10g00315 454 MobiDBLite consensus disorder prediction 414 443 - -
Vimu10g00315 454 MobiDBLite consensus disorder prediction 414 454 - -
Vimu10g00315 454 Pfam Protein kinase domain 125 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00315 454 ProSiteProfiles Protein kinase domain profile. 122 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00315 454 SMART serkin_6 122 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00315 454 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 26 403 - -
Vimu10g00315 454 Gene3D Transferase(Phosphotransferase) domain 1 198 399 - -
Vimu10g00315 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vimu10g00315 454 SUPERFAMILY Protein kinase-like (PK-like) 106 393 IPR011009 -
Vimu10g00315 454 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Vimu10g00315 454 Coils Coil 450 454 - -
Vimu10g00315 454 Gene3D Phosphorylase Kinase; domain 1 82 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00315 Vimu-Chr10 2112417 2114361 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00315 111 442 Receptor kinase-like Gene Family AT5G38280 39.589 4.81e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vimu10g00315 Pkinase 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00315 - - aprc:113852543 714.531