Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00313 ATGACTGAACGCTCTAATGATCTTAATGCAGTTGTCATTGTTGTGAAAATTGGAATTTTCTTTTGCGTATTGAGAGCATGCCAAAAAAGATATCAGGTTAATGGTAGTTTTAAACAGACAGGAACACCAGATAAACAATTTATGACACTCACTATGGATAAATTTCTGAATGATATGGAAAAGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCAACTGATAATTACTCTTATCACTTGGGCTCAGGAGGTTTTGGGTCTGTTTATAAAGGAAGTTTTAGTAATGGAACCATTATAGCTGTGAAAGTTCTACGTGGGAGTTCTGACAAAATAATTGATGCACAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTCCATCATTTCAATCTAGTTCGTCTATATGGGTTTTGCTTCGAAAGACACTTGAGGGCACTGGTTTACGAGTACATGGTGAATGGCCCGCTTGAGAAGTACCTATTTCATGAAAGCACCATCTTATCATTCGAAAAGCTCCATGAGATCGCAATTGGTACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAGAGAATAATCCATTATGATATTAAACCAGGAAATATTCTCTTGGATATGAACTTTTGTCCTAAAGTTGCTGATTTTGGTTTGGCGAAGATTTGCAACAGGGACCATACTCATATAACCATGACTGGGGGGGGTGGGGGCACTCCTGGTTATGCCGCACCTGAACTTTGGTTGCCATTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGCATGCTGTTATTTGAAATCATTGGCAGAAGGAAAAACCATAACATTAACCATCCAGAAAGTCAGGTTTGGTTTCCGATGTGGGCTTGGGAAAAATTTGCTGCTGAAAAAGTGGGGGAGTTGATAACTTCTTGTGGGATAGACGACAAAGATAGGGAGATTGCTGAAACAATTGTTAAAGTAGCTTTGTCATGTGTTCAGGATAAGCCAGAAGCAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGTTGAAGTTCCAAATCCTCCAAACCCATTTCAGTACCTCATTGGTTGGGTTCCACCCACTCATGGTACTGACACAGATATCAGTTCTGACTCGTCAGCATTGGTAACCAAATCTGTCCCTGTACTTGCCACCCATGCTATCACCACCGACGAGATTCAATTAGCGTCTGTATAA 1227 0.4067 MTERSNDLNAVVIVVKIGIFFCVLRACQKRYQVNGSFKQTGTPDKQFMTLTMDKFLNDMEKEKPIRFTDQQLRIATDNYSYHLGSGGFGSVYKGSFSNGTIIAVKVLRGSSDKIIDAQFMAEVGTIGKVHHFNLVRLYGFCFERHLRALVYEYMVNGPLEKYLFHESTILSFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDMNFCPKVADFGLAKICNRDHTHITMTGGGGGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIIGRRKNHNINHPESQVWFPMWAWEKFAAEKVGELITSCGIDDKDREIAETIVKVALSCVQDKPEARPIMSVVVKMLEGSVEVPNPPNPFQYLIGWVPPTHGTDTDISSDSSALVTKSVPVLATHAITTDEIQLASV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00313 408 SUPERFAMILY Protein kinase-like (PK-like) 61 349 IPR011009 -
Vimu10g00313 408 Gene3D Transferase(Phosphotransferase) domain 1 154 356 - -
Vimu10g00313 408 SMART serkin_6 77 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00313 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vimu10g00313 408 FunFam Putative receptor-like protein kinase 154 356 - -
Vimu10g00313 408 Gene3D Phosphorylase Kinase; domain 1 51 153 - -
Vimu10g00313 408 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vimu10g00313 408 Pfam Protein tyrosine and serine/threonine kinase 81 348 IPR001245 GO:0004672|GO:0006468
Vimu10g00313 408 FunFam serine/threonine-protein kinase PBS1-like 48 153 - -
Vimu10g00313 408 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00313 408 PANTHER OS07G0415500 PROTEIN 52 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00313 Vimu-Chr10 2108516 2109742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00313 66 380 Receptor kinase-like Gene Family AT5G38280 39.319 1.96e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vimu10g00313 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00313 - - gmx:100305451 598.201