Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00311 ATGCCCTTTTCTTTTATTTTTTTGTTCTTCATTTTGAAACTCATAGTGGAGAAGAAAATGGCTGAAAATATTAAGAGAAGCAGCTTCGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTGTGAAGCCTCTTCATGGCGTCAAACATGTCACTGTGATAGTCCCTACACGAACAGTCACTGTTGTTCATGATGTTCTCTTCATTTCTGACTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCTAGTTTGAGACTGCAGGGAGAGACTGATAATGAAAAGAAATGGCCAGATTTAACTACAATGGTGTGTGGCTTGTTTCTGGCACTTTCTTTCTTGAAATATATATATCACCCATTGGAATGGTTGGCACTTGTTTCTGTTGTCACTGGCTTCCCTACGGTTCTACTCAGGGCCATTGCATCCATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTAGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGTGTCATTATCTTCTTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAAAGGTTGCAATGTCTTCTTTGACTAGCATGGCTCCTCAAAAAGCTGTTATTGCTGAAACTGGGGAACGTGTTGACGTGAATGATGTTAAGATCAACACCGTACTTGCAGTCAAGTCGGGTGATGCTATTCCTCTTGATGGAATAGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCTGTGATCAAAGAGTTTGATTCAGTAGTGTTGGCTGGAACCATCAATGTGAATGGATATATAAGTGTGAAAACTACAGTGCTGGCAAAAGACACAGTGGTCGCTAGAATGTCAAAACTTGTTGAAGAGGCCTCTAGCAGAAAATCTCGAACACAAAGATTCATTGATAATTTTGCTAAGTACTATATTCCTGCTGTTGCTTTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGCATTAGAAATTCCTGATATAAAACCTTGGTTTCATCTTGCAATTGTTGTTTTGTTAAGTGCGTGTCCTTGTGCTCTCATCCTCTCCACTCCCGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAACAAATGGGTTACTACTGAAAGGTGGAGATTATATTGAAACACTGTCTGGAATTAAGACAGTGGCTTTTGATAAAACTGGCACAATAACAAGGGGAGAATTCACAGTGGCAGATTTTTCTGTTGTAGATGACATTAGCATTGAAACTTTACTGTACTGGGTTTCAAGTATCGAGAGTAAATCGAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTCTAATTCTGTGAAGCCAATCCCTGAAAATGTTGAGAATTTTGAAAATTTTGCTGGTGAAGGAGTTTTTGGTACAATTGATGGGAAGGTTATCTATATTGGAAATAGAAGAATCGGTTCTAGGGCTGACTCCGGAAGAGTCTTCAGCTTAGTCGATACTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTGTTAGGCGTGAGATCTGTCATGCTAACGGGAGATAGCACTCAAGCAGCTATGTATGTTCAAAGTCAGTTGAACCGAGCTCTAGACATTGTACATGCAGAGCTTCTACCTGCAGAAAAGGCAGTGATCATTGAGAATTTGAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATAAATGATGCTCCTGCATTGGCCACAGCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGACTGGCAATGCAATTCTTTTGTCGAACGACATCCGAAAGATACCTGAAGCCATTCGGCTTGCAAGGAAAACCACCAGAAAGCTCATTGAGAATGTCATTATTTCAGTTGGCTTCAAGAGTGCTATACTTGCATTAGCAATTGCAGGATACCCTATTGTTTGGCTTGCTGTGTTGACTGACGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGAGAAACCAAAACATGCAAGAAAATCTGCAAGTTCTAAATATGGCACCTTCTCGGAAGATCTGACCATGACTCCACTGGACAATGAAAGTAACAACATTAATAACCAAGGGCTTCTTACTGGTGAAAAATGTGGTAAAGATTGTTGTAAAGACGACACTTATCATGTAGAAACTACAAGCAAGAATGAATCTTCTGGACTTTTGAAGTTGAGCAAGAGAAACCAAAGTGGAAACTCTGTCTCTATTGAGGTGCATATAGTGAAACCTTGCAATGGTTGTTGTCTAAGAAAGGTAAAAGCATTTGACGACTCTGCATGCAGAACAAATAATGGTTCTGGTTGTTGCCAAGGGCAATCCAAGACTGAACAATGTGTCACTGGCTCTGATGCCAGAGAAGATGCCAACATTGCTTCCTTGGAGTCTTATTGCCTTAAGGACAAATCAGAGGATATTCTAGACTTGTCTGAGACAGAAGGGATTCCAAAGTGCTGCAATAAGACATGCTGCAATGATAGTTTTAAAAATATGACTAGCCTTAGCCAACCAGAAATTATTATAGAGTGA 2622 0.4058 MPFSFIFLFFILKLIVEKKMAENIKRSSFEVLGMCCATEAALVERIVKPLHGVKHVTVIVPTRTVTVVHDVLFISDSQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLFLALSFLKYIYHPLEWLALVSVVTGFPTVLLRAIASIKALTLNINILVLLAVCSTAALQDFWEAGVIIFLFSIAQWLETRATHKAKVAMSSLTSMAPQKAVIAETGERVDVNDVKINTVLAVKSGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKEFDSVVLAGTINVNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVALISASIAVVPAALEIPDIKPWFHLAIVVLLSACPCALILSTPVAIFCALTKAATNGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVADFSVVDDISIETLLYWVSSIESKSSHPMAAALVEYGMSNSVKPIPENVENFENFAGEGVFGTIDGKVIYIGNRRIGSRADSGRVFSLVDTCRSGALEAIEELKLLGVRSVMLTGDSTQAAMYVQSQLNRALDIVHAELLPAEKAVIIENLKKDGLTAMIGDGINDAPALATADIGISMGISGSALANETGNAILLSNDIRKIPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGYPIVWLAVLTDVGTCLLVILNSMLILQEKPKHARKSASSKYGTFSEDLTMTPLDNESNNINNQGLLTGEKCGKDCCKDDTYHVETTSKNESSGLLKLSKRNQSGNSVSIEVHIVKPCNGCCLRKVKAFDDSACRTNNGSGCCQGQSKTEQCVTGSDAREDANIASLESYCLKDKSEDILDLSETEGIPKCCNKTCCNDSFKNMTSLSQPEIIIE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00311 873 ProSitePatterns Hypothetical cof family signature 2. 581 603 - -
Vimu10g00311 873 ProSitePatterns E1-E2 ATPases phosphorylation site. 409 415 IPR018303 -
Vimu10g00311 873 NCBIfam heavy metal translocating P-type ATPase 158 683 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 401 IPR023298 -
Vimu10g00311 873 FunFam Copper-transporting ATPase 1, putative 196 310 - -
Vimu10g00311 873 Pfam haloacid dehalogenase-like hydrolase 403 595 - -
Vimu10g00311 873 CDD HMA 29 91 IPR006121 GO:0046872
Vimu10g00311 873 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Vimu10g00311 873 PRINTS Cadmium-transporting ATPase signature 40 61 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 PRINTS Cadmium-transporting ATPase signature 29 38 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 PRINTS Cadmium-transporting ATPase signature 291 305 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 PRINTS Cadmium-transporting ATPase signature 193 213 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 PRINTS Cadmium-transporting ATPase signature 272 288 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu10g00311 873 SUPERFAMILY HMA, heavy metal-associated domain 21 92 IPR036163 GO:0046872
Vimu10g00311 873 FunFam Putative cadmium/zinc-transporting ATPase 3 21 94 - -
Vimu10g00311 873 SUPERFAMILY Calcium ATPase, transduction domain A 221 306 IPR008250 -
Vimu10g00311 873 Gene3D - 21 94 - -
Vimu10g00311 873 Gene3D - 196 310 - -
Vimu10g00311 873 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 21 688 - -
Vimu10g00311 873 Pfam E1-E2 ATPase 217 386 - -
Vimu10g00311 873 FunFam Putative cadmium/zinc-transporting ATPase 3 418 529 - -
Vimu10g00311 873 SUPERFAMILY HAD-like 405 682 IPR036412 -
Vimu10g00311 873 NCBIfam HAD-IC family P-type ATPase 180 662 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00311 873 Gene3D - 417 507 IPR023299 GO:0000166
Vimu10g00311 873 PRINTS P-type cation-transporting ATPase superfamily signature 256 270 - -
Vimu10g00311 873 PRINTS P-type cation-transporting ATPase superfamily signature 527 537 - -
Vimu10g00311 873 PRINTS P-type cation-transporting ATPase superfamily signature 605 617 - -
Vimu10g00311 873 PRINTS P-type cation-transporting ATPase superfamily signature 407 421 - -
Vimu10g00311 873 PRINTS P-type cation-transporting ATPase superfamily signature 581 600 - -
Vimu10g00311 873 Gene3D - 375 638 IPR023214 -
Vimu10g00311 873 NCBIfam cadmium family heavy metal-translocating P-type ATPase 158 685 - -
Vimu10g00311 873 CDD P-type_ATPase_HM 109 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00311 Vimu-Chr10 2100135 2105504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00311 21 806 Primary Pumps ATPases AT4G30110 53.228 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00311 K01534 - gmx:100815324 1369.76