Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00310 ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCATGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTTGATGCCACCAATGGTTTTAGCTCAGGGAATTTGGTTGGGAGAGGGGGATATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATTGGCACAATTGGTCACGTGCGCCATGCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTCGGTTCTGTTGCTTCTGTTATTCATGATGAGAACTTGCCTCCTTTAGATTGGAAGACAAGGTACAAGATAGCTCTTGGGACCGCACGTGGTCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCACTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGGTCTCACCAAAGCGTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTTTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTGGTGGAGGTAATGGAGAAGTGGGAAATAGATAAAGAGAAATGGGAAATGGCAGAGGAGAAGGAGCAAGAGGTGGAGCTATGGGGTTTTGATGATCTGGAATATGCAGATGACACTTCCTTTTCAATGTCTCTACCTGACTCAGTTGCAAGTACTTAA 1116 0.4624 MKYIRSNSLKRLFSFGKRGFGEENNVGLVAPSCEEHPLRPSWKCFSFEELFDATNGFSSGNLVGRGGYAEVYKGTLRGGEEVAVKRLTRTSTDERKEKEFLIEIGTIGHVRHANVLPLLGCCIDNGLYLVFELSTVGSVASVIHDENLPPLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNVLLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEILSGRKPVDGSHQSVHSWAKPILNKGEIEKVVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVVEVMEKWEIDKEKWEMAEEKEQEVELWGFDDLEYADDTSFSMSLPDSVAST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00310 371 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Vimu10g00310 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vimu10g00310 371 SUPERFAMILY Protein kinase-like (PK-like) 36 328 IPR011009 -
Vimu10g00310 371 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00310 371 Gene3D Phosphorylase Kinase; domain 1 31 133 - -
Vimu10g00310 371 PANTHER OS08G0249100 PROTEIN 34 352 IPR046958 -
Vimu10g00310 371 CDD STKc_IRAK 63 326 - -
Vimu10g00310 371 FunFam Putative receptor-like serine/threonine-protein kinase 25 133 - -
Vimu10g00310 371 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00310 371 Pfam Protein tyrosine and serine/threonine kinase 60 321 IPR001245 GO:0004672|GO:0006468
Vimu10g00310 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vimu10g00310 371 FunFam Putative receptor-like serine/threonine-protein kinase 135 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00310 Vimu-Chr10 2093424 2096742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00310 37 369 Receptor kinase-like Gene Family AT5G56890 40.643 3.60e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu10g00310 PK_Tyr_Ser-Thr 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00310 - - gmx:100804983 690.649