Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00290 ATGGAGAAAGAGAGATCAAAAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATCAGAGATCCGACCAAACCTACGGGAAGACAGTGGTTAGGAACATTTGACACTGCAGAAGAAGCAGCAAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCCATCCTTAATTTCCCCGATGAGTATTACTCTCATCTTCCTTTTCTGTTGTCGTCAAATTCTTCTACTGTAGACAATGGAAGTTCTTTTGCCACAAAGGAAGTTATTGAGTTCGAGTATTTGGATGACAAGGTCTTGGAGGATCTTCTTGAGATTGAAGAGAAGACAAGGAATAATTAA 372 0.4274 MEKERSKEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFLLSSNSSTVDNGSSFATKEVIEFEYLDDKVLEDLLEIEEKTRNN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00290 123 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Vimu10g00290 123 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Vimu10g00290 123 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vimu10g00290 123 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vimu10g00290 123 PANTHER DNA-BINDING DOMAIN 4 112 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00290 Vimu-Chr10 1878467 1878838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00290 8 121 AP2-EREBP Transcription Factor Family AT3G23230 58.400 5.39e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g00290 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00290 - - gmx:100797513 194.126