Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00286 ATGGCAACAACGTCGGTGGTGCCGGCGAACCGGCGGAGGACGGTGAACGCGGCGGAGGATTTGGACTTCGAGACGACAGAGGGTGTGAAGGCGATCGCGAGCTTCGAGGAGATGGGGATAAAGGACGATCTGCTCCGTGGAATCTACCAGTACGGCTTCGAGAAGCCCTCCGCCATTCAGCAACGGGCCGTCACGCCAATCATTCAGGGCCGTGACGTTATCGCTCAGGCTCAATCCGGAACCGGCAAAACCTCCATGATTGCCCTCACCGTTTGCCAGGTTGTCGATACCTCCGTCAGAGAGGTTCAGGCCTTGATATTATCACCAACAAGGGAACTGGCCTCTCAGACTGAGAAGGTTATATTGGCTATTGGGGATTTCATTAACATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGTGAGGATATTAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTCTGTGACATGATCAAAAGGAGAACATTGCGCACGAGGGCTATCAAGATGCTAGTTCTGGACGAATCTGATGAGATGTTGAGCAGAGGATTTAAAGATCAAATTTATGACGTGTATAGATATCTTCCCCCTGACCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTCGAAATGACAAACAAATTCATGACCGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTAGAGGGCATCAAGCAATTTTTTGTTGCAGTCGAAAGGGAGGAGTGGAAGTTTGATACTCTGTGTGATCTTTATGATACACTCACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGGAAGGTTGACTGGTTAACTGAAAAAATGCGTAACAACAATTTCACTGTGTCATCGATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACTCGGGTATCTCTAGTTATCAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCATCGAATTGGTCGCTCTGGACGTTTTGGGCGAAAGGGTGTTGCAATAAATTTTGTGAAGAGTGATGACATCAAGATATTGAGAGACATTGAGCAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCCGATCTTATATAA 1173 0.4569 MATTSVVPANRRRTVNAAEDLDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00286 390 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Vimu10g00286 390 CDD SF2_C_DEAD 246 360 - -
Vimu10g00286 390 Pfam Helicase conserved C-terminal domain 259 351 IPR001650 -
Vimu10g00286 390 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Vimu10g00286 390 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 390 IPR001650 -
Vimu10g00286 390 SMART helicmild6 286 351 IPR001650 -
Vimu10g00286 390 SMART ultradead3 52 249 IPR014001 -
Vimu10g00286 390 FunFam Eukaryotic initiation factor 4A-III 16 237 - -
Vimu10g00286 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 382 IPR027417 -
Vimu10g00286 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 237 IPR027417 -
Vimu10g00286 390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Vimu10g00286 390 Gene3D - 17 237 IPR027417 -
Vimu10g00286 390 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 373 - -
Vimu10g00286 390 FunFam Eukaryotic initiation factor 4A-III 240 390 - -
Vimu10g00286 390 Gene3D - 325 390 IPR027417 -
Vimu10g00286 390 Gene3D - 238 324 IPR027417 -
Vimu10g00286 390 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00286 Vimu-Chr10 1828750 1832257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00286 1 390 Eukaryotic Initiation Factors Gene Family AT3G19760 82.353 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00286 K13025 - gmx:100795032 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00286 10 1828750 1832257 Vimu10g00286 10 1828750 1832257 ECH