Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00284 GCAAATTCTGTAAGCAATGGCAGAACTGCACAATCCAGCAACAATACAAGACTTTCAGATTCCAGAAATGTGGAACAATCACAGAATAGAGACAAGAGTGCAAGATTTTTCTATTTCCAAAGGTTCATGGTATTCTCAACTGCTTTTCTCCATGAAGGGCCCCCCTTTTTCTCTAGAAAAAGGCCAAGAGCATTAGATCTTGAACATCAAGATATAGATTTACATGCAGATGCAGAAAGGTGCATTAGTACTGGTGATGTTCCCTCTTCCAGTAACACTGACGATAAAGTTGACCCAGATTCTGGAATGGAGATGAGCTGTCCATCAAATGTTAACAATGGCTATGTTCCTGCGTGTTCTACAACAGGGAATATATCACACATGGACCAGAGTTTCTGTGGCTATGTGCAACAGCCTGCTCTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAAGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTCATTAATGGCACAATAATGAACCCTGTACCACTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGCATCTCAGGCACAAGGATACCTACAATGGCAGTATATGAACAAGATAGATCTTTCGAGGCTGTTCCTCTTGCTGGTAACCCAGATTCGGAATCTGTGTCACATTCACATGTTAATTACTGTAGTAAGGAATCCAATCACTTAAATCCACACTCAGAGCCATTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCCCATTCTATCAATGAATTGATTTCTTGGCACAGTCACGGATATCTTAAAGATTCAGCAGTGGATGCTGGTTTGGGCCCAAGCCCAACAAAATGGCCAAACAAAGATTTTATTACAATTGCTAATGTTGTCAGTTTGTTAGAGAGGGAAGCATACATATTGGGAGTGGGCATAATCTTTCATTCTGATAAGAAGTATGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGACGATATGGTAGAGTTGATTAGTGAAATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGATAAGAAATGTAAGAGGCAAAAGCTAGAATCAGTTGTCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGCTATTCCCAGTGATCCTGCTACTACCCATATTTATGATGATGAGGCTTGTCATGAAAGCTCTAGACTTCCCTCAGCCAGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACGATAGCAGATTACTTATATTCTTGGAGGAAGAGGGAGATTTGGTCTCATCCTGAGCCTCAACCATTTACTAATGCCGAGAAGATTGAATCAGAAGCTTTGGTTCACAAGCCAGATTTCCCTGAAAGCAATGCTAATGGCTATAATCAGTCTGGAGTATTAATAACAAAAGGAAATCATCCTCATTCATTTTTATCTCCTAGTGGGTTCGAAGGTGGAAACTTACTGAAAGGTCAAAATTTTTCTTCTCCTTACAATGACTCTAAAGATTTGTCATTCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGCATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAATAAAATAGTTCCTTTCCTAGAAGAAAACAAATTAAATGAGGTTGCTGTTAGTGACACTTGTTTTTCAGATATACTTGCTGACAAAACGTCTGTGAAGGAAATTCTAAATGAGAAGTCTTTGAATTCTTTTGAGGAAGGAAATTCATTTGGCAAGTCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGGAGATGATGTGGTTGAAGAGGAGAGTGATAACCTACCACCTGGAATTGAAGAGAAGAGTCAAACAGTTGTCCTACACCACGATTTGAAATTTCGACCTTCAAGGTCAGTTGAATGTCATCCTAAGATCACAGAATATGTTGCAACTGCATTGTGCCGGCAAAAATTGCATGAAGAAGTTCTGGAAGAGTGGAAGTCGTTGTTTCTTGATTCTGTGCTCGATCAAGTTTTTAGATCAAGTACCTTAAAGAAACATTTTATGTCTGATGGGCAGGAGAAAGGAGAAACGTTCAATTCAAGCAAGGAAAATTTGAATGGTGCTACTTCTGGACTGGGAAGAGAGAAGGAAGGAGAAAAGAGAGCTGAAGTTCGTCTGGTGATTGGAAAGAATACTTATCACCGCAAGAAGCTATTGCGGAAGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAATGATTCTAGGCCAGGGAAGAAGCCAACAGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTGGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACATGTAAAGACAAAGAAGATTAAAGGGAAGACGGATTCATGTTCTAAGGGCAGGTCTTCTGTCACTGTCAATGCCAGCTCACACAGTGATCAATTATCTTTAAAGAATAAACCTGGTCAGAAAGTGTTGAAGTTTTCAGAGAATGTTATGGATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCAACTGATAATAGTGTTCGTGACAAGAAGGTTGTCAAAAGTGATGTTAAAGAGAAAGCCACAGGTCATTCCTCGATAGAGATTCAAAGTGCAAATAAGAAAGCATCAAAATCAAAAAGGAAACATCAAATGGATGGTACATCATCTTCACATCCCACGAAGATTTTGAAAATTTCAAATGGTGGTGCTTTTCTGGATGGCAGTAAACAAGTTATTGTGGAAAGGACGAAGTCTGCTAAATCCAAACCATTGAACTTGTGTCCTAAATCTAGTGGATGTGCTAGGACTTCTATTGATGGATGGGAGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGATTACGTTTTCAAAGGAGCAAGATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAAGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATTGCTAGATTTATTAACCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAAATTTTCATATATGCAAAACGACATATAAAGGCCGGTGAAGAAATAACATACAATTACAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGTTCCAGAAAGTAA 3810 0.3966 ANSVSNGRTAQSSNNTRLSDSRNVEQSQNRDKSARFFYFQRFMVFSTAFLHEGPPFFSRKRPRALDLEHQDIDLHADAERCISTGDVPSSSNTDDKVDPDSGMEMSCPSNVNNGYVPACSTTGNISHMDQSFCGYVQQPALVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGTRIPTMAVYEQDRSFEAVPLAGNPDSESVSHSHVNYCSKESNHLNPHSEPFNSLISCQMLREECCWLYEDEKGMKHGPHSINELISWHSHGYLKDSAVDAGLGPSPTKWPNKDFITIANVVSLLEREAYILGVGIIFHSDKKYDTFVLLSVVNALKGDTTGTICRSGSKINEVDDMVELISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTDKKCKRQKLESVVHTPENKMVSKGSAIPSDPATTHIYDDEACHESSRLPSASFKSVGSVENFWWSYAVVRKVLLDYCMQVMWNAVFFDTIADYLYSWRKREIWSHPEPQPFTNAEKIESEALVHKPDFPESNANGYNQSGVLITKGNHPHSFLSPSGFEGGNLLKGQNFSSPYNDSKDLSFILESVENELHFSSKASFADYIRHFVEKEVNKIVPFLEENKLNEVAVSDTCFSDILADKTSVKEILNEKSLNSFEEGNSFGKSASGNLMSDIFSKAFKELCGYGDDVVEEESDNLPPGIEEKSQTVVLHHDLKFRPSRSVECHPKITEYVATALCRQKLHEEVLEEWKSLFLDSVLDQVFRSSTLKKHFMSDGQEKGETFNSSKENLNGATSGLGREKEGEKRAEVRLVIGKNTYHRKKLLRKELVSSQTVAENDSRPGKKPTGKLRKLVCGDVGEAVEVEIASVKHVKTKKIKGKTDSCSKGRSSVTVNASSHSDQLSLKNKPGQKVLKFSENVMDVVKSTVKKLSVPTDNSVRDKKVVKSDVKEKATGHSSIEIQSANKKASKSKRKHQMDGTSSSHPTKILKISNGGAFLDGSKQVIVERTKSAKSKPLNLCPKSSGCARTSIDGWEWHKWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRK 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 908 933 - -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 807 822 - -
Vimu10g00284 1269 SUPERFAMILY GYF domain 274 312 IPR035445 -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 1 27 - -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 82 104 - -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 967 982 - -
Vimu10g00284 1269 SMART set_7 1136 1259 IPR001214 GO:0005515
Vimu10g00284 1269 ProSiteProfiles SET domain profile. 1136 1253 IPR001214 GO:0005515
Vimu10g00284 1269 ProSiteProfiles GYF domain profile. 278 333 IPR003169 GO:0005515
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 912 933 - -
Vimu10g00284 1269 Pfam SET domain 1148 1252 IPR001214 GO:0005515
Vimu10g00284 1269 Gene3D - 270 342 IPR035445 -
Vimu10g00284 1269 Gene3D - 134 205 IPR035445 -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g00284 1269 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 86 1269 IPR044570 GO:0042800|GO:0051568
Vimu10g00284 1269 Gene3D SET domain 964 1269 IPR046341 -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 967 1013 - -
Vimu10g00284 1269 MobiDBLite consensus disorder prediction 806 831 - -
Vimu10g00284 1269 CDD SET_SETD1 1124 1269 IPR037841 GO:0042800|GO:0048188
Vimu10g00284 1269 SUPERFAMILY SET domain 1132 1268 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00284 Vimu-Chr10 1784483 1795497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00284 1135 1265 C2H2 Transcription Factor Family AT2G23740 36.601 4.06e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu10g00284 SET 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00284 - - gmx:100805708 1824.29