Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00276 ATGGAAAAGGGTTGCAAGGAAGCTCCTGTTCGAATTTATTCTGACGGGATTTATGATCTTTTTCACTTCGGCCATGCCCGTTCTCTTGAGCAAGCTAAGAAACTGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCATAAGTATAAGGGCAAAACTGTTATGACTGAGAAGGAACGCTATGAGTCTCTTCGCCACTGCAGGTGGGTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACCAAGGAGTTCCTTGACAAGCATCAAATTGACTATGTGGCACATGATAGTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGATGTGTATGAATATGTTAAGTCTGTTGGAAAATTTAAGGAAACAAAGCGGACCGATGGAATTTCTACTTCTGATATTATAATGAGAATTATCAAAGATTATAATCAATATGTAATGCGTAATTTGGACCGTGGTTACTCAAGAAAGGAACTAGGTGTCAGCTATGTCAAGGAGAAGAGGTTGAGAATGAACATGGGACTTAAAAAATTGCAGGAGAGAGTGAAGAAACAACAAGAGAAAGTGGGGAAAAAGATTCAAACGGTGGGAAAAATTGCTGGAATGCACCCTAATGAATGGGTTGAAAATGCAGATCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGCTGCCATAAAATGGGAACAGCAATCAGAGACAGAATACAAGAACAATTGAGGGCACAACAGCTGAAATCTCTTCTTTATGATGAGTGGGATGATGATGATTCATTCTATGATGGTGAATACTACTCCGACTAA 825 0.4024 MEKGCKEAPVRIYSDGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITKEFLDKHQIDYVAHDSLPYADASGAGKDVYEYVKSVGKFKETKRTDGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQEKVGKKIQTVGKIAGMHPNEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLRAQQLKSLLYDEWDDDDSFYDGEYYSD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00276 274 PANTHER CYTIDYLYLTRANSFERASE 6 265 IPR045049 GO:0004105|GO:0006657
Vimu10g00276 274 Gene3D HUPs 1 230 IPR014729 -
Vimu10g00276 274 NCBIfam cytidyltransferase-like domain 11 78 IPR004821 GO:0003824|GO:0009058
Vimu10g00276 274 SUPERFAMILY Nucleotidylyl transferase 11 143 - -
Vimu10g00276 274 Pfam Cytidylyltransferase-like 15 142 IPR004821 GO:0003824|GO:0009058
Vimu10g00276 274 Coils Coil 174 201 - -
Vimu10g00276 274 FunFam Choline-phosphate cytidylyltransferase 2 1 230 - -
Vimu10g00276 274 CDD CCT 9 159 IPR041723 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00276 Vimu-Chr10 1722433 1727595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00276 36 272 Acyl Lipid Metabolism Gene Families AT2G32260 77.917 1.59e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00276 K00968 - gmx:100791886 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00276 10 1722433 1727595 Vimu10g00276 10 1722433 1727595 ECH