Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00275 ATGATGGGTGAAACTGAGTCTGAGAGTCCCTTGGGTGCACCAAGCATGAGCCCTATGAGAACAGGAAAACCATGCAGCCCATCAGAGCACAGCATAAGTTTGATGGTTATTTTGGCAGCCATAGTGTGTGCCTTGCTATGTGCTCTTGGTCTGAACACAATGTTGCAATGTGTGTTCCAATGTGCGAATCGTGTTGTGACGGAACCCTTTCAATGGATTGCCTCAAGGAGACTGAATTCAGGGCTGAAGAAGAGAGAAGTGGTGGCTCTGCCAACGTCGACCTACACTCATTCTGGTGGCTCTCCGTGTAACTGTGCCATTTGCTTATCGGAGTTTTCTGATGGGGACAGCATAAGGTTCCTCCCAAACTGCAATCACCGTTATCATGTTCAGTGCATTGATAAGTGGCTCTTTTCTCACTCTTCTTGCCCTACTTGTAGGACCCTCCTTAAGTCTACTCATTCACTACACTCCTTGCATGTTATAGTATCATAG 495 0.4687 MMGETESESPLGAPSMSPMRTGKPCSPSEHSISLMVILAAIVCALLCALGLNTMLQCVFQCANRVVTEPFQWIASRRLNSGLKKREVVALPTSTYTHSGGSPCNCAICLSEFSDGDSIRFLPNCNHRYHVQCIDKWLFSHSSCPTCRTLLKSTHSLHSLHVIVS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00275 164 Pfam Ring finger domain 104 147 IPR001841 -
Vimu10g00275 164 SMART ring_2 105 146 IPR001841 -
Vimu10g00275 164 PANTHER RING-H2 FINGER PROTEIN ATL78 31 154 IPR044602 GO:0016567|GO:0016740
Vimu10g00275 164 SUPERFAMILY RING/U-box 104 154 - -
Vimu10g00275 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 153 IPR013083 -
Vimu10g00275 164 CDD RING-H2_EL5-like 105 147 - -
Vimu10g00275 164 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vimu10g00275 164 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00275 Vimu-Chr10 1718349 1718843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00275 2 150 C3H Transcription Factor Family AT3G10910 37.736 1.82e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00275 - K19040 gmx:100803003 256.144