Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00248 ATGGCTCTCTGTATTCTCCACTCACTGAAACAACAATCCATGGAAACACTGTTACCATACTTTCTCTTCTTCCTCCTTTCTCTTATCATCACTTTCAAACTTTTCTTCCAAACAAATCACAAAAACCTTCCACCAGCTCCACCACCTCTTCCAATAATCGGCAACCTTAACATCCTCGAACGCCCCCTCCACCGTTTCCTCCAACGCATGTCCCAAACACACGGCCACGTCTTCTCCCTCTGGTTCGGTTCCCGTCTCGCCGTCATCGTTTCATCCCCCTCCGCCTTCCAAGAATGTTTCACCAAAAACGACGTCGCCTTGGCCAACCGACCTCGCTCCCTCTCCGGAAAGCACATCTTCTACAACTACACCACCGTGGGCTCCTGCTCCTACGGCGATCACTGGCGTAACCTCCGCCGCATCATCGCACTAGACGTTCTCTCAACTCAACGCATCCACTCCTTCGCGGGAATCCGCAAAGACGAAACGGAGAGGCTGCTGCGTACCCTGGCAAAGGCCTCACGCATGGAGTATGCACAGGTGGAGCTAGGCTCCATGTTCCATGACATGACGTATAACAACATGATGAGGATGATATCGGGGAAAAGGTACTACGGGAATGAGATTCAGGTGAAGGATTTGGAAGAGGCGAAGGAGTTCAGAGAGACGGTGGAGGAAATGCTGAAACTGGCGGGAGTTTCCAACAAGGCAGATTATTTGCCCTTCCTTCGGTGGTTCGATTTTCAGAACCTGGAGAAGAAGCTCAAGAGTATTAACAAGAGATTCGATACGTTCTTGGATGCACTCATTCACGAGCAACGCAACAAGAAGGAGAGAGAGAATACCATGATGGATCATCTTCTGTATCTGCAAGAGTCTCAGCCGGAGTACTATACTGATCAAATCATCAAAGGTCTTGTTTTGGCTATGCTCTTCGCTGGGACAGATTCATCAGCCGTGACTTTGGAGTGGTCACTGTCAAATTTATTGAACAAGCCAGAGGTGTTGAAGAAAGCAAGAGATGAATTGGATAGTAAAGTAGGGAAAGAGCGTTTGGTAAATGAATCAGACCTTCCAAATCTTCCTTACCTTAGAAAGATAATCCTTGAGACACTTAGGTTATACCCTCATGCTCCACTGGCAATACCACATGTTTCCTCGGAAGACATAACCATTGAAGAGTTCAACGTTCCACGAAACACCATAATAATTGCTAATATTTGGGCCATGCATAGAGACCCTGTATTGTGGAATGAAGCCACATGTTTCAAACCGGAGAGGTTTGATGAAGAGGGATTGGAGAAGAAGTTGGTGTCATTTGGAATGGGAAGAAGGGCTTGTCCAGGAGAAACTTTGGCTATGCAGAATGTTGGGTTGACTTTAGGATTATTAATTCAATGCTTTGACTGGAAGCGGGTAAATGAGGATCAAATTGATATGAGAGAGGCAGATCGGTTCACTTCATCCAGGTTAACTCCATTGAAGGTCATGTGCAAAACCCGCTCACTCATTCACAACCTTAATTTCAAATAA 1533 0.4644 MALCILHSLKQQSMETLLPYFLFFLLSLIITFKLFFQTNHKNLPPAPPPLPIIGNLNILERPLHRFLQRMSQTHGHVFSLWFGSRLAVIVSSPSAFQECFTKNDVALANRPRSLSGKHIFYNYTTVGSCSYGDHWRNLRRIIALDVLSTQRIHSFAGIRKDETERLLRTLAKASRMEYAQVELGSMFHDMTYNNMMRMISGKRYYGNEIQVKDLEEAKEFRETVEEMLKLAGVSNKADYLPFLRWFDFQNLEKKLKSINKRFDTFLDALIHEQRNKKERENTMMDHLLYLQESQPEYYTDQIIKGLVLAMLFAGTDSSAVTLEWSLSNLLNKPEVLKKARDELDSKVGKERLVNESDLPNLPYLRKIILETLRLYPHAPLAIPHVSSEDITIEEFNVPRNTIIIANIWAMHRDPVLWNEATCFKPERFDEEGLEKKLVSFGMGRRACPGETLAMQNVGLTLGLLIQCFDWKRVNEDQIDMREADRFTSSRLTPLKVMCKTRSLIHNLNFK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00248 510 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PANTHER CYTOCHROME P450 82C3-RELATED 23 501 - -
Vimu10g00248 510 SUPERFAMILY Cytochrome P450 44 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Vimu10g00248 510 Gene3D Cytochrome P450 35 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 FunFam Cytochrome P450 family protein 35 504 - -
Vimu10g00248 510 Pfam Cytochrome P450 44 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g00248 510 CDD CYP81 75 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00248 Vimu-Chr10 1543637 1545503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00248 14 507 Cytochrome P450 AT4G37340 50.902 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00248 K13260 - gmx:100798269 821.231