Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00241 ATGAGAGAAGCATCAACCCTTGGCATTGTGCTCCTCCTGTGTTTTTCTTCTGCACTCCTTTGCCGTGGAAATGAGAGGAGAGTGCTTTTGGAGGTGAAATCATCGTTCACTCAAGACCCAGAAAATGTTTTAAGTGATTGGTCAGAGAACAACGCTGATTACTGTAGCTGGAGAGGAGTGTCATGTGAATCAAAGAAGCTCGATTCTTTGGATGATGACGACGACTCGGTGCAAGTGGTGGGACTCAACCTTTCTGATTCGTCACTCGGTGGGTCGATTTCACCTTCACTTGGTCGTTTGCAAAACCTACTCCACCTTGATCTCTCTTCTAACCGCCTCGAGGGTCCTATTCCATCTGCCCTCTCCAACCTCACTTCGTTGGAATCTCTCCTTCTCCATTCCAACCAACTCACCGGTCTTATCCCCACCGAGTTAGACTCGCTAATGCATCTCCGAGTATTGCGAATCGGTAACAACCAACTCAGTGGCCCCATTCCTGAGACACTTGGGTATATGCCCAACCTCGAGTACCTTGGTTTGGCCTCATGCAGACTCAGTGGTCAGATCCCGGCCCAGCTAGGTCGACTCAGTGAGTTGCAATATTTGACTCTGCAGGAAAACGAGTTGACTGGGCCGATTCCGTACGAAGTGGGGTACTGCTGGAGCCTTGAAGTCTTCAGCGCCGCTGGGAACAGACTCAATGGCTCGGTTCCGAGTGAACTGAGTCTACTAAGGAAACTTCAAATTTTGAACCTCGCCAACAACAGCTTAACTGGGTCAATTCCGAGTCAACTCGGGCAGCTGAGTCAGCTTACATATCTGAATTTAATGGGTAACGAACTCGAGGGTCGTGTTCCACCGTCTCTGGCTCAACTGGGTAAACTTCAAAATCTTGACTTGTCAAATAATACGCTCACTGGGGAAATTCCAGAGGAGTTAGGGAACATGGGTCAGTTACAATATTTGGTTCTCTCTGGGAACAAACTCCATGGAACCATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAGAACTTGCTGATGTCAGATTGTGGACTTCATGGTGAGATACCAGCTGAGTTGGGTCAGTGCCAATCCCTGAAACAACTTGATTTATCAGGCAATGATCTCAATGGGTCAATACCTATTGATGTTTATGGGTTGATGGGGCTAACTGCTCTCTTGCTTCACAACAACACTTTGGATGGTTCAATCTCTCCCTTCATAGGAAACCTCACTGACATGCAGATTCTTGCATTGTTTCATAACAACTTGCGGGGTAATCTGCCCAGAGAGATTGGGAGGCTTGGGAAATTGGAGATAATGTATCTTTATGATAATCAGTTATCAGGGAAGATTCCTTTCGAGATTGGCAACTGTTCAAGCTTGCAAATGATTGATTTTTTTGGAAACCATTTCAGTGGTGAAATTCCCTTCACTATAGGGAGGCTGAAAGAGTTGAACTTTTTGCACCTTAGGCAGAATGAGCTTGTGGGCGTGATTCCCCCCACACTCGGGAACTGTCATAAACTGACTGTGCTGGATTTGGCAGATAATCGATTCTCAGGTGGCATTCCTGCAACATTCGGATTCCTCAGAGAGTTGAAGCTGTTCATGCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTCACCAACTTGTAAATCTAGCAAACCTGACCAGAGTAAATCTTTCAAATAACAGACTGAATGGTAGTTTGGTTCCATTATGTAGCTCTAGTTCCTTTCTTTCTTTTGATGTCACAGATAATGAATTTGACGGTGAAATACCCTTTGTCCTGGGAAATTCACCTTCCCTTGACAGGCTGAGATTGGGTAACAACAAGTTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCACCGCATTGTCATTGTTAGACGTCTCAGGAAATTCACTCACAGGTCCAATACCAGACGAGCTTTCTTTGTGTAATAACCTGACTCACGTTGATCTAAACAACAATCTTCTAACTGGACACATACCACCATGGCTTGGAAGCTTGTCTCAGCTGGGAGAGGTTAAGCTCTCCTTCAATCAATTTTCTGGGTCTATTCCACTAGGCCTACTCAAACAGCCCAATTTGATTGTTCTTTCCTTGAATAACAATTCTCTCAATGGAAGTCTCCCAAGTGATATTGGTGGTCTTGTATCTCTTAACACCCTCAGGCTGGACCATAATAAGTTCTCTGGACCAATCCCTCAAGAAATAGGAAAATTGAGCAATCTTTATGAGCTGCAGCTATCTAGGAATGCCTTTAGTGGGGAAATACCAATTGAGATTGGAAGTCTCCAAAATATCCAAAGCATTTTGGACTTAAGTTACAATAATCTCTCTGGTCATATCCCATCTTCACTTAGCATGCTGTCAAAATTGGAAGTACTTAATCTTTCTCACAATGCACTCACTGGAGAAGTGCCTTCAGCAGTTGGTGAAATGACTAGCTTGCAGAAGCTTGACATCTCTTACAATAACCTTCAAGGAGCATTGGATAAGCAATTCTCCCGCTGGCCTCATGAGTCATTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGCAAGATGCAAAAATGGTGATGGTTCCGGCAATAAGCGATCGGTCTTCAGCAGCACATCAGTGGTTATAGTCTCTACGCTTTCAGCTTTAGCTGCAATTGCTTTACTTGCACTTGTAGTGATCGTCTTCTTTAAAAGCAAGCAAGAAATTTTCAGGAGAGGCAGTGAAGTGAGTTTTGTATTCTCCTCTTCATCACGAGCATATAAACGATCGTTGATCCCTCTAAATGTACCTGCAAAGAGAGATTTCAGGTGGCAGGATATCATGGGTTCCACAAACAATCTAAGCGACGAGTTCGTAGTTGGTTGTGGAGGTTCTGGGACAGTGTACAAAGTCGAATTGCCCTCTGGAGAGATCGTGGCTGTGAAGAAGATTTCAGGAAAAGATGATTATCTGTTGAACAAAAGCTTTATAAGAGAAATCAAAACTTTAGGGAGGATCAAACATAGGCATCTGGTAAAACTGATGGGTTGTTGCAGCAACAGAATCAAAGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTTTGGGATTGGTTACATGGGGTGCCCCTCAAAGCAAAGAGGATCCTTGATTGGGACACAAGGTTCAAAATTGCAATGGGATTAGCTCACGGAGTGGAGTACCTCCATCACGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTACTAGATTCCGACATGGAGGCACACCTGGGAGACTTTGGACTGGCAAAATCACTCGTTGAGAATCCAGAATCTAATGCAGAATCTAATTCCTGCTTTGCTGGATCTTATGGATACATAGCCCCAGAGTATGCATACTCACTGAAGGGCACAGAGAAAACTGATGTGTACAGCATGGGAGTGGTGTTTATGGAACTTGTTACTGGTAAAATGCCAACAGATGCAGCTTTCGGAGCAGAGATGAACATGGTGAGATGGGTGAAGATGCAGCTTGAGAAGGAAGGCATTACGGTTGAAGCAGTGATAGATCCTAAGCTGAAACCCCTTTTGCCTTGTGAAGAGTTTGCAGCATTGCAGGTGCTCGAGATAGCCATACACTGCACAAAAACTGCTCCACAAGAGAGACCAACATCAAGGCAAGTATGCAATCATCTCCTTCACGTCTCCAACAACAAAATTGTGGATTTTGAAAAGAAGAATCTGGATCATTACTTGTGA 3780 0.441 MREASTLGIVLLLCFSSALLCRGNERRVLLEVKSSFTQDPENVLSDWSENNADYCSWRGVSCESKKLDSLDDDDDSVQVVGLNLSDSSLGGSISPSLGRLQNLLHLDLSSNRLEGPIPSALSNLTSLESLLLHSNQLTGLIPTELDSLMHLRVLRIGNNQLSGPIPETLGYMPNLEYLGLASCRLSGQIPAQLGRLSELQYLTLQENELTGPIPYEVGYCWSLEVFSAAGNRLNGSVPSELSLLRKLQILNLANNSLTGSIPSQLGQLSQLTYLNLMGNELEGRVPPSLAQLGKLQNLDLSNNTLTGEIPEELGNMGQLQYLVLSGNKLHGTIPRTICSNATSLENLLMSDCGLHGEIPAELGQCQSLKQLDLSGNDLNGSIPIDVYGLMGLTALLLHNNTLDGSISPFIGNLTDMQILALFHNNLRGNLPREIGRLGKLEIMYLYDNQLSGKIPFEIGNCSSLQMIDFFGNHFSGEIPFTIGRLKELNFLHLRQNELVGVIPPTLGNCHKLTVLDLADNRFSGGIPATFGFLRELKLFMLYNNSLEGSLPHQLVNLANLTRVNLSNNRLNGSLVPLCSSSSFLSFDVTDNEFDGEIPFVLGNSPSLDRLRLGNNKFSGEIPRTLGKITALSLLDVSGNSLTGPIPDELSLCNNLTHVDLNNNLLTGHIPPWLGSLSQLGEVKLSFNQFSGSIPLGLLKQPNLIVLSLNNNSLNGSLPSDIGGLVSLNTLRLDHNKFSGPIPQEIGKLSNLYELQLSRNAFSGEIPIEIGSLQNIQSILDLSYNNLSGHIPSSLSMLSKLEVLNLSHNALTGEVPSAVGEMTSLQKLDISYNNLQGALDKQFSRWPHESFEGNLHLCGASLARCKNGDGSGNKRSVFSSTSVVIVSTLSALAAIALLALVVIVFFKSKQEIFRRGSEVSFVFSSSSRAYKRSLIPLNVPAKRDFRWQDIMGSTNNLSDEFVVGCGGSGTVYKVELPSGEIVAVKKISGKDDYLLNKSFIREIKTLGRIKHRHLVKLMGCCSNRIKGTGWNLLIYEYMENGSVWDWLHGVPLKAKRILDWDTRFKIAMGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSDMEAHLGDFGLAKSLVENPESNAESNSCFAGSYGYIAPEYAYSLKGTEKTDVYSMGVVFMELVTGKMPTDAAFGAEMNMVRWVKMQLEKEGITVEAVIDPKLKPLLPCEEFAALQVLEIAIHCTKTAPQERPTSRQVCNHLLHVSNNKIVDFEKKNLDHYL 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00241 1259 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 607 1240 - -
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 479 575 - -
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 386 463 IPR032675 -
Vimu10g00241 1259 SMART serkin_6 956 1241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Vimu10g00241 1259 Pfam Leucine Rich Repeat 654 676 IPR001611 GO:0005515
Vimu10g00241 1259 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515
Vimu10g00241 1259 SMART LRR_typ_2 316 340 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 557 582 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 244 268 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 748 772 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 437 461 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 172 196 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 100 123 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 797 820 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 124 147 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 821 852 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 485 509 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 676 700 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 292 315 IPR003591 -
Vimu10g00241 1259 SMART LRR_typ_2 701 724 IPR003591 -
Vimu10g00241 1259 Pfam Leucine Rich repeat 364 380 IPR001611 GO:0005515
Vimu10g00241 1259 ProSitePatterns Protein kinases ATP-binding region signature. 962 985 IPR017441 GO:0005524
Vimu10g00241 1259 PRINTS Leucine-rich repeat signature 797 810 - -
Vimu10g00241 1259 PRINTS Leucine-rich repeat signature 295 308 - -
Vimu10g00241 1259 SUPERFAMILY RNI-like 81 403 - -
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 531 868 IPR032675 -
Vimu10g00241 1259 ProSiteProfiles Protein kinase domain profile. 956 1241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 283 385 IPR032675 -
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 464 530 IPR032675 -
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 286 384 - -
Vimu10g00241 1259 Gene3D Transferase(Phosphotransferase) domain 1 1037 1257 - -
Vimu10g00241 1259 SUPERFAMILY L domain-like 576 861 - -
Vimu10g00241 1259 FunFam Uncharacterized protein 385 478 - -
Vimu10g00241 1259 SUPERFAMILY Protein kinase-like (PK-like) 932 1240 IPR011009 -
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 576 868 - -
Vimu10g00241 1259 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 918 1036 - -
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 191 - -
Vimu10g00241 1259 Gene3D Phosphorylase Kinase; domain 1 918 1036 - -
Vimu10g00241 1259 FunFam Leucine-rich repeat receptor-like protein kinase 1037 1256 - -
Vimu10g00241 1259 Gene3D Ribonuclease Inhibitor 22 183 IPR032675 -
Vimu10g00241 1259 Pfam Protein kinase domain 961 1238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00241 1259 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 192 285 - -
Vimu10g00241 1259 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Vimu10g00241 1259 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515
Vimu10g00241 1259 Pfam Leucine rich repeat 778 834 IPR001611 GO:0005515
Vimu10g00241 1259 SUPERFAMILY RNI-like 430 649 - -
Vimu10g00241 1259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1084 1096 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00241 Vimu-Chr10 1502205 1506195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00241 40 745 Receptor kinase-like Gene Family AT1G73080 36.056 6.88e-104 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g00241 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00241 - - gmx:100797153 1949.48