Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g00230 | ATGGAAGCGTTCGGTGGGTTCGCGGTGGACGAGAAAGCCGTTACGGTTGAGAACGCTTTTTTGGATTTTCTTAAAAGATCTAGCCAACGGAACGAGATTCAATACGAAGCGGAGATTGAAGTGATGAGAGTCAATGAATCCAACACTATGTTCATCGATTTCTCCCACGTCGTCAAATTCAGCGACCTCCTCCAGCAGACTATCTCCGACGAGTATTTGAGATATGAACCTTATTTGAAGAATGCTTGTAAGAGATTTGTCATGGAACTCAAGCCGTCAGTTGTATCCGACGATGGCCCTAACAAGGACATCAACGTTGCTTTCTACAACATTGCAGTTATTAAGCGGTTAAGGGAATTGGGTACCTCGGAAATTGGGAGACTTGTATCCGTTACAGGAGTGGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGGACTTTCAAGTGCTTGGATTGCGGTACTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACCGAGCCAACAATATGTACAAATGCCACCTGTAACAATCGAACAAGGTGGGTATTGCTTCGCCAGGAGAGCAAGTTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCGGGCTCTCTTCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATCGTGGAACAGGCCAGGGCTGGTGACACAATAATCGATCACATTCTGGCTGTCTGTAGGGTGATTTTCACAGGTACAGTAGTTGTCATACCTGACATAATGGCATTAGCATCTCCTGGAGAAAGATCAGAGTGTCGTCGTGATGCTTCTCAACGCAAGGGTCCCACCGCTGGAAATGAAGGTGTCAGTGGCCTCAAGGCCCTGGGAGTCAGAGACCTCTCCTATCGTCTAGCGTTTATTGCTAACTCTGTTCAGATTTGTGATGGAAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGTCGATGAAGATGACCAACAGTTTACTACGCAGGAACTGGATGAAATTCAACGAATGAGGAATACTCCTGATTTTTTCAACAAACTAGTTGAAAGCGTTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTCATGGGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAATGTCTGCGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTCAAGTATACGTCAGGCATAGTGCCAAGATCTGTATATACATCTGGGAAATCCTCATCTGCTGCAGGCTTGACTGCAACTGTTGCGAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATCTGCTGCATTGATGAATTTGACAAGATGGACATCAAAGATCAGGTTGCCATTCACGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCTGGAATACAAGCAACACTTAATGCTCGTACGTCCATTCTTGCCGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCGGCTATACTTTCGAGGTTCGATCTCGTGTATGTTATGATTGATGATCCAGATGATCAGACAGATTATCACATTGCCCATCATATTGTGAGAGTTCATCAAAAGCGAGAAGCTGCTCTTGCTCCAGCGTTCTCTACAGCAGAACTGAAGCGTTATATAGCATATGCAAAAACTCTTAAACCAAAGGTTAAGCTCACGTCAGATGCCAGAAAACTACTGGTAGACTCTTATGTTGCGCTTCGTAGAGGTGATACAAATCCAGGGAGTAGAGTTGCTTATCGTATGACAGTTAGGCAGTTGGAAGCATTAATCAGGCTGTCAGAGGCCATCGCACGGTGTCATTTGGACAATCAGGTACAACCTCGCCATGTTCGTCTAGCAGTGAAACTGCTGAAAACTTCTATTATAAGCGTGGAGTCCAGTGAGATCGATCTGTCAGAGTTTCAAGAAGAAAATCAGAATGCCGGGGCAGCTGGTGGTGTTGGAAATGAAAATAATGGAGATGCTAATGGCGCAGGCGGTGATGGAAATGATAATAGAGATGCTAATGATGGAAATCAAGCAGATGGATCTAACTCCCAGGGAATGAGACAAGCTGACCGAAATGATGGAAATCCAGCGGATGGGTCTAAACCCCAAGCGAAAAAACTCGTTATAAGTGATGAATATTTCCAAAGAGTAACCAGCGCCCTTATCATGCGTCTTAGGCAGCATGAGGAGGCTGCTATGCAAGGAATTTCTATGGACTTCACAGGAAATGGTTTGGCTGGAATGAGACAAAAAGATTTGATTCAATGGTACGTAGACCAACAAAACGAGAGAAATAACTACAGTTCGATGGAGGAAGTGGCAGCTGAAATTTCAAAAATTAAAGCTATTATAGAGAGTTTAATTCGCAGAGAGGGTCATTTGATAGTGGTGGATGATGGGCAAGAGGCGGCTGCTGAAGGAGGAGGCGCACCTAGAAATAACCGAATTTTAGCGGTGGCTCCCAATTATGTCGTGGATTGA | 2595 | 0.4455 | MEAFGGFAVDEKAVTVENAFLDFLKRSSQRNEIQYEAEIEVMRVNESNTMFIDFSHVVKFSDLLQQTISDEYLRYEPYLKNACKRFVMELKPSVVSDDGPNKDINVAFYNIAVIKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLDCGTVIKNVEQQFKYTEPTICTNATCNNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTIIDHILAVCRVIFTGTVVVIPDIMALASPGERSECRRDASQRKGPTAGNEGVSGLKALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDVDEDDQQFTTQELDEIQRMRNTPDFFNKLVESVAPTVFGHPDIKRAILLMLMGGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREAALAPAFSTAELKRYIAYAKTLKPKVKLTSDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENQNAGAAGGVGNENNGDANGAGGDGNDNRDANDGNQADGSNSQGMRQADRNDGNPADGSKPQAKKLVISDEYFQRVTSALIMRLRQHEEAAMQGISMDFTGNGLAGMRQKDLIQWYVDQQNERNNYSSMEEVAAEISKIKAIIESLIRREGHLIVVDDGQEAAAEGGGAPRNNRILAVAPNYVVD | 864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g00230 | 864 | Gene3D | - | 329 | 668 | IPR027417 | - | |
| Vimu10g00230 | 864 | SMART | mcm | 113 | 664 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 286 | 307 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 72 | 84 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 164 | 181 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 114 | 126 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vimu10g00230 | 864 | Pfam | MCM N-terminal domain | 18 | 110 | IPR027925 | - | |
| Vimu10g00230 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 21 | 237 | IPR012340 | - | |
| Vimu10g00230 | 864 | Gene3D | - | 117 | 236 | IPR012340 | - | |
| Vimu10g00230 | 864 | MobiDBLite | consensus disorder prediction | 708 | 728 | - | - | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 392 | 407 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 452 | 466 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 480 | 493 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 504 | 516 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 531 | 539 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | Pfam | MCM OB domain | 117 | 236 | IPR033762 | - | |
| Vimu10g00230 | 864 | MobiDBLite | consensus disorder prediction | 266 | 286 | - | - | |
| Vimu10g00230 | 864 | ProSiteProfiles | MCM family domain profile. | 351 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | ProSitePatterns | MCM family signature. | 460 | 468 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vimu10g00230 | 864 | FunFam | DNA helicase | 741 | 864 | - | - | |
| Vimu10g00230 | 864 | Gene3D | - | 144 | 195 | - | - | |
| Vimu10g00230 | 864 | Gene3D | - | 8 | 113 | - | - | |
| Vimu10g00230 | 864 | Gene3D | - | 741 | 864 | - | - | |
| Vimu10g00230 | 864 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 361 | 664 | IPR027417 | - | |
| Vimu10g00230 | 864 | Coils | Coil | 808 | 828 | - | - | |
| Vimu10g00230 | 864 | FunFam | DNA helicase | 144 | 195 | - | - | |
| Vimu10g00230 | 864 | Pfam | MCM6 C-terminal winged-helix domain | 743 | 863 | IPR041024 | - | |
| Vimu10g00230 | 864 | FunFam | DNA helicase | 336 | 668 | - | - | |
| Vimu10g00230 | 864 | Pfam | MCM P-loop domain | 339 | 561 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | CDD | MCM6 | 354 | 662 | - | - | |
| Vimu10g00230 | 864 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 809 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vimu10g00230 | 864 | Pfam | MCM AAA-lid domain | 576 | 663 | IPR041562 | - | |
| Vimu10g00230 | 864 | MobiDBLite | consensus disorder prediction | 679 | 744 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g00230 | Vimu-Chr10 | 1394541 | 1399930 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu10g00230 | 1 | 864 | Core DNA Replication Machinery Family | AT5G44635 | 70.549 | 0.0 | 1256 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g00230 | K02542 | - | gmx:100787290 | 1404.04 |