Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00224 CATTCAATTCGAGGTCGAATATTCAGTCCGTGCATGGATCCTGGAAGGGATGCGGGTGGTGTGGCAGGGACAGTTCTAATTCCCATGCGTTTTGTATGGCCATATGGAGGAAGGAGTGTGTTTCTCTGCGGTTCTTTCACAAGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACCGTGTTTCAAGTTATTTATAATCTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTACGTACCAGGAGAATATGGGATGGTCAACACTGTCTTCTTGGCTACTGATCCCAACTACATACCTGTTTTGAATTCAGATGTTGCACCTGGAAATAGCATGGATGTGGATAACGAGGCTTTTCGCCGAGTGGTCCGGTTGACTGATGGTAGTGAGGTGCTGCCAAGAATATCCGAATCTGATGTACAAATCTCCCGTCAGCGTATTTCTGCATTTCTTTCTTCCCACACTGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGACGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGGTCTAATCTGACAGAGGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTAAATAGGCAGAACAATGGACATGGAGCTGTGTTTTCTAGACGTTTTATCCATTCAGGGCCATATGACAATCTGAAAGATATTGCCGTGAAAATCCTCCAAAAGGAGGTTTCAACTGTTCCTGTTATCCATTGTTCTTCTGAACATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGCACTTCAATTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTACCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCGTTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCGTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCAAGTTCTTTTTCATTTTACATACCTATAAACTGCCAACAATCAGTTATCTTTTCTTTTGCATGTTTTTTGGTCCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGGTGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGCTTGGCAAATCCAGGTGTGAGGCGGCTTGTGATTGTGGAAGCCGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGCGACATATTCAAGTTCTTCCTTGGTGGTTAG 1566 0.4368 HSIRGRIFSPCMDPGRDAGGVAGTVLIPMRFVWPYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGMVNTVFLATDPNYIPVLNSDVAPGNSMDVDNEAFRRVVRLTDGSEVLPRISESDVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGAVFSRRFIHSGPYDNLKDIAVKILQKEVSTVPVIHCSSEHASFPQLLHLASLSGILKCICRYFRHCSSSLPALQFPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQASSFSFYIPINCQQSVIFSFACFLVQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00224 521 Pfam Glycogen recognition site of AMP-activated protein kinase 27 107 IPR032640 -
Vimu10g00224 521 Pfam CBS domain 473 519 IPR000644 -
Vimu10g00224 521 Pfam CBS domain 360 406 IPR000644 -
Vimu10g00224 521 FunFam Sucrose nonfermenting 4-like protein 24 109 - -
Vimu10g00224 521 ProSiteProfiles CBS domain profile. 174 236 IPR000644 -
Vimu10g00224 521 Gene3D Immunoglobulins 27 120 IPR013783 -
Vimu10g00224 521 SUPERFAMILY CBS-domain pair 359 520 IPR046342 -
Vimu10g00224 521 Gene3D - 151 334 IPR046342 -
Vimu10g00224 521 SUPERFAMILY CBS-domain pair 161 331 IPR046342 -
Vimu10g00224 521 CDD E_set_AMPKbeta_like_N 28 106 - -
Vimu10g00224 521 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 148 518 - -
Vimu10g00224 521 Gene3D - 352 520 IPR046342 -
Vimu10g00224 521 SUPERFAMILY E set domains 27 108 IPR014756 -
Vimu10g00224 521 ProSiteProfiles CBS domain profile. 358 415 IPR000644 -
Vimu10g00224 521 ProSiteProfiles CBS domain profile. 466 521 IPR000644 -
Vimu10g00224 521 SMART cbs_1 362 410 IPR000644 -
Vimu10g00224 521 SMART cbs_1 180 229 IPR000644 -
Vimu10g00224 521 SMART cbs_1 470 519 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00224 Vimu-Chr10 1366918 1375281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00224 17 135 Protein tyrosine phosphatase (PTP) family AT3G01510 28.125 3.52e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00224 - - gmx:100785692 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01832 7 16680133 16686299 Vimu10g00224 10 1366918 1375281 PCT