Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00220 ATGGAAGATAGCTTTGGAGGCAGTTCCTCGAAGGACAAGTGCAGCATCATGGAACAAGACCAGTTGCTGCCAATAGCAAATGTTGGTCGGCTCATGAAGCAGATTCTGCCGCAGAATGCAAAGATCTCGAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTTCGGAGAAGTGCAGAAAGGAGAGGAGAAAGACAGTGAATGGTGATGACATTTGCTGGGCATTGGCTACGCTAGGATTTGATGACTATGCTGCACCAATGAGAAGGTACTTGCACAGATTTAGAGAGCTTGAGCGAGACCATAATAATAGTAAGCTCAATCATCATGAAAGATAA 369 0.4444 MEDSFGGSSSKDKCSIMEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAAPMRRYLHRFRELERDHNNSKLNHHER 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00220 122 Gene3D Histone, subunit A 10 122 IPR009072 GO:0046982
Vimu10g00220 122 SUPERFAMILY Histone-fold 19 117 IPR009072 GO:0046982
Vimu10g00220 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu10g00220 122 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu10g00220 122 FunFam Nuclear transcription factor Y subunit B-6 11 122 - -
Vimu10g00220 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 86 IPR003958 -
Vimu10g00220 122 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Vimu10g00220 122 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vimu10g00220 122 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00220 Vimu-Chr10 1318686 1319054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00220 16 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.832 1.04e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu10g00220 CBFD_NFYB_HMF 2.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00220 K08065 - gmx:100794513 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00220 10 1318686 1319054 Vimu10g00220 10 1318686 1319054 ECH
Vimu7g01827 7 16620345 16621141 Vimu10g00220 10 1318686 1319054 PCT