Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00219 ATGTTTCGCTTCCAAAGCATCAAACCCTTTTTTCTCCACTCCAAGGGACTCACAACCCCTTTTTCCTCAACACTCTCTCTGAAACACTTCTCCCTCACTTCGCAACAACACTCATTCACCGTTTCCTACCTCATAGAAACCTTTGGCTTCGTACCACAAGCCGCTCTCAAGGTTTCCAAGCACGTTAGCTTCGATACCCCTCAAAAGCCCGACTCAGTCATCGCTTTCTTCAACAGAAATGGATTCACCCACGCTTACATCAACAGCATCGTCAAAAGCATACCCCACATACTCATATGCAACGCTGACGAGAGGCTTTCGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTGCTTCTGATATCGTTCGCATCGTTAATAGGTGCCCCAGAATCCTCACATCCAGCCTCAAGAACAACGTGATCCCCTCCTTCGAATTGGTGAGAAGGTTCCTCCAATCTGACCAGAAAACCATTGATTGTGTTTTCGGTAGTAGACCTTTCCTTCTATATAACGTTGGAGCGCAGAATGTGGACATGTTGCTTGATGTTGGAGTCAAGGACTCCGGCATCGGCTATTTGTTCGGAAGGAGGCCCTCTATACTCTTGTCTACTGACTTGAGGGAGGCTATTGATGAAGTTAAGGAAATGGGGTTCGACCCTTCCAAGTTAGCTTTCGTCATCGCCTTGCACGCCAAAAGGTCTCTGTCGAAATCGCGCTGGGACGCGAAAGTTGATGCCTTTAAGATGTGGGGTTGGTCTGAGGAAATGGTTTTTGATTCGTTCAGGAAGCATCCCCTCTTAATGTTGGTATCCAAAGATAAAATTAATGAGATCATGAGATTTTGGGTTGTTGAATTAGGTTGGGACCCTTTGGCACTAGCCAAAATGCCCAATATATTTGGATTCAGTTTGGAGAGAAGGATTGTTCCGAGGGGTTTGGTTGTCCGGTATTTGATTGTCAAAGGTTTGAGAGAGAAGAGTGCCAAGTTGTATACTCCGTTTGGTGTTTCTGAAGAGTTGTTTCTTAAAAATTTTGTGATGCGTTTTAAGGAGGAATCGTCTCAACTGTTAAAGCTTTATCAGAGCAAAAAAAGTTCCCAAGAAAACAGGGAGGACGGTGTAGAATCTGCCAGTTAG 1143 0.4479 MFRFQSIKPFFLHSKGLTTPFSSTLSLKHFSLTSQQHSFTVSYLIETFGFVPQAALKVSKHVSFDTPQKPDSVIAFFNRNGFTHAYINSIVKSIPHILICNADERLSPKFQFLLSKGASASDIVRIVNRCPRILTSSLKNNVIPSFELVRRFLQSDQKTIDCVFGSRPFLLYNVGAQNVDMLLDVGVKDSGIGYLFGRRPSILLSTDLREAIDEVKEMGFDPSKLAFVIALHAKRSLSKSRWDAKVDAFKMWGWSEEMVFDSFRKHPLLMLVSKDKINEIMRFWVVELGWDPLALAKMPNIFGFSLERRIVPRGLVVRYLIVKGLREKSAKLYTPFGVSEELFLKNFVMRFKEESSQLLKLYQSKKSSQENREDGVESAS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00219 380 Gene3D Transcription termination factor 3, mitochondrial 156 361 IPR038538 -
Vimu10g00219 380 PANTHER CGI-12 PROTEIN-RELATED 36 352 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 FunFam Mitochondrial transcription termination factor-like 138 355 - -
Vimu10g00219 380 Pfam mTERF 75 170 IPR003690 GO:0003690|GO:0006355
Vimu10g00219 380 Pfam mTERF 177 342 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00219 Vimu-Chr10 1312274 1313416 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00219 mTERF 8.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00219 K15031 - gmx:100792944 435.261