Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00217 ATGTTCAATAAACTTCTGTACTTGAAATGTGTCACTCCCACAGCAACATCACCTTACCCTTTTACCCACCACTACCCATTCCTCTTTTCTCTCTGTTTCTGCACTGACACTTCAAATTCACGCTCATTTGCGGTATCCTACCTCATTCACAACTTTGGATTCTCTCCTGAATCTGCTTCCAAAACATCTAAGTCCTACAATATTTGTTTCCAGACCTCAGAAAAGCCCGAGAGAGTGATCAGGTTCTTCAGAAATAATGGTTTCTCTAATGTCCAAATAAACAATATGGTTAGAAGGTCACCATGGTTGCTTTCCTGTGACCCATGCAAAAGGGTAATGCCAAAGTTTGAATTTTTCCTCTCAAAGGGTGTTTCTAGCTCTGAAATTGTTGACCTAGTGAATAAGTACCCTGCAGTACTGGGTTCAAGCCTGAAGAATCAGATAGTTCCAACCTATGAATTGATTTATAAGTTCTTGCAATCTGATGTGAAGACTATTGGTTGTATGCTTGGTAATTCATTTTTCTGTCGGGGCGATATTCTAGCACACAACATCAGATTGCTGCTGAAGAATGGAGTGAGAGAAACGAACATTGCAAGATTGCTTGGGAACCGTTGTAAGGGGGTCTTTTGCTCAAATGATATGGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGATTTGATCCTTCAAAAGCAGTTTTTGCTGTAGCGTTGATGGCCAAAAAAGAAACGACTCCTTCCATGTGGAAGCAGAAAGTTGATACCTTAAAGAAATGGGGTTGGTCTGATGAAGCCTTGTCTGAAGCATTTAGGAGGCACCCTCACATTATGTTGGCATCCATTAAGAAAATAAATGTTGTGATGAACTTTTGGGTCAATCAGTTGGGTAGGGATGCTTTGGAACTTGTTCGTTTTCCAAAGATTTTCGGGTTGAGTATGGAAAAGACAATCATTCCAAGGTATCGTGTTGTCCAGCATTTACTTGCTGAAGGCTTGAGGAAAAGCAGTGCCAGCTTTTTGACGCCGATTGCTATTTCTGAAAAGGCCTTTCTTGAAACCTTTGTGACAAGTTTTAAGGAGGAATCATGTCAACTTTTAAAGTTGTACCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCGGCATGGGGCAATTCTCAAATTGTTAACTCATGA 1182 0.4052 MFNKLLYLKCVTPTATSPYPFTHHYPFLFSLCFCTDTSNSRSFAVSYLIHNFGFSPESASKTSKSYNICFQTSEKPERVIRFFRNNGFSNVQINNMVRRSPWLLSCDPCKRVMPKFEFFLSKGVSSSEIVDLVNKYPAVLGSSLKNQIVPTYELIYKFLQSDVKTIGCMLGNSFFCRGDILAHNIRLLLKNGVRETNIARLLGNRCKGVFCSNDMVKLVKEVKDLGFDPSKAVFAVALMAKKETTPSMWKQKVDTLKKWGWSDEALSEAFRRHPHIMLASIKKINVVMNFWVNQLGRDALELVRFPKIFGLSMEKTIIPRYRVVQHLLAEGLRKSSASFLTPIAISEKAFLETFVTSFKEESCQLLKLYQEKVSVQGKEEVGAAWGNSQIVNS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00217 393 Pfam mTERF 81 284 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 Pfam mTERF 249 350 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 Gene3D Transcription termination factor 3, mitochondrial 173 367 IPR038538 -
Vimu10g00217 393 Gene3D Transcription termination factor 3, mitochondrial 40 172 IPR038538 -
Vimu10g00217 393 PANTHER CGI-12 PROTEIN-RELATED 40 359 IPR003690 GO:0003690|GO:0006355
Vimu10g00217 393 FunFam Mitochondrial transcription termination factor-like 144 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00217 Vimu-Chr10 1307169 1308350 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00217 mTERF 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00217 K15031 - gmx:102663414 519.62