Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00216 ATGTTCAATAAACTTCTGTACTTGAAATGTGTCACTTCCACAGCAACATCACCTTACCCTTTTATCCACCACCACCCATTCCTCTTTTCTCTCTGTTTCTGCACTGCCACTTCAAATTCACCCTCATTTGCGGTATCCTACCTCGTTGACAACTTTGGGTTCTCCCCTGAATCTGCTTCCAAAAAATCTAAGTCCTGCAAGATTTCTTTCCAGACCCCAGAAAAGCCCGAGACAGTGATCAGGTTCTTCAGAAATCACGGTTTCTCTAATATTCAAATAAACTATATGGTTAGAAAGGCACCGTGGTTGCTTTCTTATGACCCCTGCAAAACGTTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGATGTTTCTAGCTCTGCAATTGTTGACCTAATAAGTAAGTACCCTGCAGTACTGCGTCCAAGCCTGAAGAATCATATAGTCCCAACCTATGAATTGGTATATAAGTTCTTGCAATGTCATGTGAAGACTAATCGTTTTATGTTTCGTAGTACATGTTTCTTTAGCGGGGATAGTCTGACACATAAAATCATATTGCTGCTCGAGAATGAAGTGAGCGAATCAAACATTGCAAGATTACTTGGGAACCATAGTAAGGCGGTCTTTGCCTCAAATGATATAGTTAAGTCGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAATCAAATTTTGTTAAAGCGTTGATGGCCATAAAAAAAATAAGTCCTTCCCTATGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCGGTGTCTGAAGCATTTAGGAGGCACCCTCAAGTTATGTTGACATCTATTAAAAAAATAAATGCTCTGATGAACCTTTGGGTCAATGAGTTGGGAAGGGATGCTTTGGAACTTGTCCGTCGTCCAAATATTTTCTTTATGAGTATGGAAAAGAGAATCATTCCAAGGACCCGTGTTCTCCAGCATTTACTTGCTAAAGGCTTGAGGAAAAGTGCCAACTTTGCTTATCCGTTTTCAGTTTCTGAAAAGTTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATTGGGCAGTTATCAAATTGGTAACTCGTGA 1179 0.3961 MFNKLLYLKCVTSTATSPYPFIHHHPFLFSLCFCTATSNSPSFAVSYLVDNFGFSPESASKKSKSCKISFQTPEKPETVIRFFRNHGFSNIQINYMVRKAPWLLSYDPCKTLLPKFEFFLSKDVSSSAIVDLISKYPAVLRPSLKNHIVPTYELVYKFLQCHVKTNRFMFRSTCFFSGDSLTHKIILLLENEVSESNIARLLGNHSKAVFASNDIVKSVKEVKDLGFDPSKSNFVKALMAIKKISPSLWKEKVDTFKKWGWSDEAVSEAFRRHPQVMLTSIKKINALMNLWVNELGRDALELVRRPNIFFMSMEKRIIPRTRVLQHLLAKGLRKSANFAYPFSVSEKLFLARFVTCFKEESCQLLKLYQEKVSVQGKEEVGAALGSYQIGNS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00216 392 PANTHER CGI-12 PROTEIN-RELATED 40 359 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 Pfam mTERF 81 268 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 Pfam mTERF 249 349 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 232 262 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 SMART mt_12 199 228 IPR003690 GO:0003690|GO:0006355
Vimu10g00216 392 FunFam Mitochondrial transcription termination factor-like 144 361 - -
Vimu10g00216 392 Gene3D Transcription termination factor 3, mitochondrial 174 366 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00216 Vimu-Chr10 1303689 1304867 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00216 mTERF 4.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00216 K15031 - gmx:102663414 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01826 7 16610264 16611388 Vimu10g00216 10 1303689 1304867 PCT