Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00215 ATGTTCAATAAACTTCTGTACTTGAAATGTGTCACTCCCACAGCAACATCACCTTACTCTTTTATCCACCACTACCCATACCTCTTTTCTCTCTGTTTCTGCACAGCCACTTCAAATTCATACTCATTTGCGGTATCCTACCTCATTCACAACTTTAGATTCTCTCCTGAATCTGCTTCCAAAACATCCAAGTCCTACAATATTTCTTTCAAGACCTCAGAAAAGCCCGAGACAGTGATCAGGTTCTTCAGAAATCACGGTTTCTCTAATATTCAAATAAACTATATGGTTAGAAAGACACCATGGTTGCTTTCTTGTGACCCCTGCAAAAGGTTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGATGTTTCTAGGTCTGAAATTGTTGACCTAATAAGTAAGTACCCTAGAGTACTGCGTCCAAGCCTGGAGAATCATATAGTCCCAACCTATGACTTGATATATAGGTTCTTGCAATCTCATGTGAGGACTACTCGTTGTATGTTTGGTAATACATTTTACTCTTGCGGGGATCGTCTGGCACACAACATCATATTGTTGCTAGAGAATGAAGTGAGCGAATCAAACATTGCAAGATTGCTTGGGAACCATAGTAAGCCGGTCTTTGCCTCAAATGATATAATTAAGTTGGTGAATGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAGCAACTTTTGTTATAGCGTTGATGGCCATAAAAAAAATAAGTCCATCCCTGTGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCGGTGTCTGAAGCATTTAGGAGGCACCCTCACGTTATGTTGACATCCATTAAGAAAATAAATGCCGTGATGAACCTTTGGGTCAATCAGTTGGGAAGGGACGCTTTGGAACTTGTCCATTGTCCAAAGATTTTCGGTTTGAGTATGGAAAAGACAATCAGTCCAAGGGCCCGTGTTGTCCAGCATTTACTTGCTAAAGGCTTGAGGAAGAGTACCAACTTTGTTTATCCGATTAGTGTTTCTGAAAAGTTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATCTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAAGTTGGTGCAGCATGGGGCAGTTCTCAAATTGTTAACACATGA 1179 0.3969 MFNKLLYLKCVTPTATSPYSFIHHYPYLFSLCFCTATSNSYSFAVSYLIHNFRFSPESASKTSKSYNISFKTSEKPETVIRFFRNHGFSNIQINYMVRKTPWLLSCDPCKRLLPKFEFFLSKDVSRSEIVDLISKYPRVLRPSLENHIVPTYDLIYRFLQSHVRTTRCMFGNTFYSCGDRLAHNIILLLENEVSESNIARLLGNHSKPVFASNDIIKLVNEVKDLGFDPSKATFVIALMAIKKISPSLWKEKVDTFKKWGWSDEAVSEAFRRHPHVMLTSIKKINAVMNLWVNQLGRDALELVHCPKIFGLSMEKTISPRARVVQHLLAKGLRKSTNFVYPISVSEKLFLARFVTCFKEESSQLLKLYQEKVSVQGKEEVGAAWGSSQIVNT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00215 392 PANTHER CGI-12 PROTEIN-RELATED 42 360 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 FunFam Mitochondrial transcription termination factor-like 144 361 - -
Vimu10g00215 392 Gene3D Transcription termination factor 3, mitochondrial 171 367 IPR038538 -
Vimu10g00215 392 Pfam mTERF 81 285 IPR003690 GO:0003690|GO:0006355
Vimu10g00215 392 Pfam mTERF 249 349 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00215 Vimu-Chr10 1297839 1299017 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00215 mTERF 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00215 K15031 - gmx:102663414 494.967