Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00214 ATGTTCAATAAACTTCTATACTTGAAATGTGTCACTTCCACAGCAACATCACGATACCGTTTCCCCTTTTCTCTTCGTTTCCGCACAGTCACTTCAAATTCACGCTCATTTGTCATATCCTACCTCGTTGACAACTTTGGGTTCTCCCCTGAATCTGCTTCCGAAAAATCTAAGTCCTGCAAGATTTCTTTCCAGACCCCAGAAAAGCCCGAGAGAGTGATCAGGTTCTTCAGAAATCAGGGTTTCTCTAATATTCAAATAAACTATATGGTTAGAAAGGCACCGTGGTTGCTTTCTTATGACCCCTGCAAAACGTTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGATGTTTCTAGCTCTGCAATTGTTGACCTAATAAGTAAGTACCCTGGAGTACTGCGTCTAAGCCTGGAGAATTATATAGTCCCAACCTATAAATTGATATATAAGTTCTTGCAATCTCATGTGAGAACTACTCGTTTTATGTTTCATAATACATTTATCTCTTTCGGGAACCGTCTGGCACACAACATCATATTGCTGCTAGAGAATGAAGTGAGCGAATCAAACATTGCAAGATTGCTTGGGAACCATAATACGGCGGTCTTTGCCTCAACTGATATAGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAACCAAATTTTGTTAAAGCGATGATGGCCATAAAAAAAATAAGTCCTTCTCTGTGGAAGGAGAAAGTTGATACCTTAAAGAAATGGGGTTGGTCTGATGAAGCGGTGTCTGAAGCATTTAGGAGGCATCCTTACTTTAGACAATCATTCCAAGGGCCCGTGCAGCATTTACTTGCTAAAGGCTTGAAGAAGAGTGTCAACTTTGTTTATGCGATTAGTGTTTCTGAAAAGTTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATCTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATGGAGCAGTTCTCAAATTGTTAACTCATGA 1041 0.3929 MFNKLLYLKCVTSTATSRYRFPFSLRFRTVTSNSRSFVISYLVDNFGFSPESASEKSKSCKISFQTPEKPERVIRFFRNQGFSNIQINYMVRKAPWLLSYDPCKTLLPKFEFFLSKDVSSSAIVDLISKYPGVLRLSLENYIVPTYKLIYKFLQSHVRTTRFMFHNTFISFGNRLAHNIILLLENEVSESNIARLLGNHNTAVFASTDIVKLVKEVKDLGFDPSKPNFVKAMMAIKKISPSLWKEKVDTLKKWGWSDEAVSEAFRRHPYFRQSFQGPVQHLLAKGLKKSVNFVYAISVSEKLFLARFVTCFKEESSQLLKLYQEKVSVQGKEEVGAAWSSSQIVNS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00214 346 Pfam mTERF 75 270 IPR003690 GO:0003690|GO:0006355
Vimu10g00214 346 Gene3D Transcription termination factor 3, mitochondrial 34 169 IPR038538 -
Vimu10g00214 346 PANTHER CGI-12 PROTEIN-RELATED 35 269 IPR003690 GO:0003690|GO:0006355
Vimu10g00214 346 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vimu10g00214 346 SMART mt_12 226 256 IPR003690 GO:0003690|GO:0006355
Vimu10g00214 346 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00214 Vimu-Chr10 1293450 1294605 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00214 mTERF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00214 K15031 - gmx:102663414 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01825 7 16601438 16604852 Vimu10g00214 10 1293450 1294605 PCT