Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00213 ATGTTCAATAAACTTCTGTACTTGAAATGTGTCACTTCCTCAGCAACATCACGTTACCCATTCCTCCTTTCTCTCTGTTTCTGCACAGCCACTTCAAATTCACGCTCATTTGCGGTATCTTACCTCATTGACAACTTTGGATTCTCTCCTGTATCTGCTTCCAAAACATGTAAGTCCTACAATATTTCTTTCCAGACCTCAGAAAAACCCGAGACAGTGATCAGGTTCTTCAGAAATCACGGTTTCCCTAATATTCAAATAAAGTATATTGTTACAAAGGCACCGTGGTTTCTTTCTTGTGACCCCTGCAAAAGGTTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGATGTTTCTAGCTCTGAAATTGTTGACCTAATAAGTAAGTACCCTGGAGTACTGCGTCCAAGCCTGAAGAATCATATAGTCCCACCCTATGAATTGATATATAAGTTCTTGCAATGTCATGTGAAGACTTATGGTTCTATGTTTCGTAATACATGTTTCTTTGGCGGGGATCGTCTGACACATAAAATCATATTGCTGCTCGAGAATGAAGTGAGCGAATCAAACATTGCAAGATTGCTTGGGAAGCATACTAAGGCGCTCTTTGCGTCAAATGATATAGTTAAGTCGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAGAAACAACTTTTTTTAAAGCGTTGATGGCCATAAAAAAAATAAGTCCTTCCCTGTGGAAGGCGAAAGTTGATACCTTGAAGAAATGGGGTTGGTCTGATGAAGCGGTGTCTGAAGCATTTAGGAGGCACCCTCACTTTAGGTTGCAATCTATTAAAAAAATAAATGCTGTAATGAACCTTTGGGTCAATGAGTTGGGAAGGGATCCTTTGGAACTTGTCCATTGTCCAAAGATTTTCTGTTTGAGTATAGAAAAGACAATCATTCCAAGGGCCCGTGTTCTCCAGCATTTACCTGCTAAAGGCTTGAGGAAAAGTGCCAGCTTTGTATATCCGATTAGTGTTTCTGAAAAGTTATTTCTTGCAAGGTATGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGCTATATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATGGGGCAGTTCTCAAATTGACAAATTTCTTTGGTTCAAGCTTGCTGTCTAA 1182 0.3934 MFNKLLYLKCVTSSATSRYPFLLSLCFCTATSNSRSFAVSYLIDNFGFSPVSASKTCKSYNISFQTSEKPETVIRFFRNHGFPNIQIKYIVTKAPWFLSCDPCKRLLPKFEFFLSKDVSSSEIVDLISKYPGVLRPSLKNHIVPPYELIYKFLQCHVKTYGSMFRNTCFFGGDRLTHKIILLLENEVSESNIARLLGKHTKALFASNDIVKSVKEVKDLGFDPSETTFFKALMAIKKISPSLWKAKVDTLKKWGWSDEAVSEAFRRHPHFRLQSIKKINAVMNLWVNELGRDPLELVHCPKIFCLSIEKTIIPRARVLQHLPAKGLRKSASFVYPISVSEKLFLARYVTCFKEESCQLLKLYQEKVSVQGKEEVGAAWGSSQIDKFLWFKLAV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00213 393 PANTHER CGI-12 PROTEIN-RELATED 34 353 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 FunFam Mitochondrial transcription termination factor-like 138 355 - -
Vimu10g00213 393 Gene3D Transcription termination factor 3, mitochondrial 49 167 IPR038538 -
Vimu10g00213 393 Gene3D Transcription termination factor 3, mitochondrial 168 360 IPR038538 -
Vimu10g00213 393 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 SMART mt_12 193 222 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 Pfam mTERF 75 270 IPR003690 GO:0003690|GO:0006355
Vimu10g00213 393 Pfam mTERF 175 343 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00213 Vimu-Chr10 1286613 1287794 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00213 mTERF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00213 K15031 - gmx:102663414 441.039