Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00212 ATGTTTCATTCCCAACGCTTCAAACCCTTTCTTCTCTATCGGAAGTCACTCTCAAGAACCCTACCACTTCAAATCCGACAACCCAACAATCCATTCCCCTCGATACTCTCTCTGAAACACTCTTCAAATGCTTCACAGCAACACTCTTTCGTGGTTTCCTACCTCGTAAACAACCGCGAGTTCTCCCCAGAAACCGCTCTGAAGGCTTCCAAATTCATTCAGTTCGAGACCTCGGAAAAGCCCGACTCAGTCATCGCATTCTTCAGAGACAACGGATTCAGCAATACCCAGATAAACAGCATCGTCGGAAGAGCACCCAAGGTTCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTACTCTCCAAAGGGGCCTCACGCTCTGACATTGTGGAACTGGTGAGTAGGAGCCCCAGAATCCTTTACTGCAGCCTCGAGAATAACATTGTCCCTTCGTATGAACTGATGAGGAAGTTTTTTCAAACTGATAAGGAAACGATGGATTGCATACGCTCTTGTAGTCATTTCTTTGGTACTGATCGTGTGGTGAAGAATGTGAAACTTTTGGTTGATGATGGAGTCACTGATCGTGTGCTAGCCTTTGTGTTACGCAGGAGAATTTCTATAATCTTGTGTTCTTCCTTGAAGAGGACTTTGGATGAGGTTAAGGAAATGGGGTTTGATCCTTCCAAGTTGAGCTTTGCCATCGCGCTGGTGGCGAAAACGACCATTCCGAAATCTCGATGGGAGAGGAAAGTTGATGCCTTTAAGAGATGGGGTTGGTCTGAAGAATTGGTTCTTAGAGTGTTTAGGAAGCAACCCCTCGTAATGTTGGTGTCCCAAGATAAGATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGGCTCTTACCAAGAAGCCAGAGATTTTTGGATTTAGTTTGGAGAGAAGGATCATTCCAAGGGCACTTGTTGTCCAGTATTTACTCAAGAAAAGTTTGAGGAGTAAGAGTGCAAGCTTGATTACGCCATTTTCTGTTTCTGATAAGGTATTTATTGAAAACTATGTCATGCGTTTTAAGGAGGAGACAAGTGAACTATTAAAGCTGTACCAATTCAAAGAGTAA 1134 0.4347 MFHSQRFKPFLLYRKSLSRTLPLQIRQPNNPFPSILSLKHSSNASQQHSFVVSYLVNNREFSPETALKASKFIQFETSEKPDSVIAFFRDNGFSNTQINSIVGRAPKVLTCDPHKRVFPKFEFLLSKGASRSDIVELVSRSPRILYCSLENNIVPSYELMRKFFQTDKETMDCIRSCSHFFGTDRVVKNVKLLVDDGVTDRVLAFVLRRRISIILCSSLKRTLDEVKEMGFDPSKLSFAIALVAKTTIPKSRWERKVDAFKRWGWSEELVLRVFRKQPLVMLVSQDKIDRIMRFWVKQLGWDYLALTKKPEIFGFSLERRIIPRALVVQYLLKKSLRSKSASLITPFSVSDKVFIENYVMRFKEETSELLKLYQFKE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00212 377 Gene3D Transcription termination factor 3, mitochondrial 167 372 IPR038538 -
Vimu10g00212 377 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 PANTHER CGI-12 PROTEIN-RELATED 47 363 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 FunFam Mitochondrial transcription termination factor-like 149 366 - -
Vimu10g00212 377 Pfam mTERF 254 354 IPR003690 GO:0003690|GO:0006355
Vimu10g00212 377 Pfam mTERF 86 292 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00212 Vimu-Chr10 1283328 1284461 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00212 mTERF 6.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00212 K15031 - gmx:102666739 526.168