Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00204 ATGGATTTCTTAGACCAGGAGATAAGCATGCATAGCCCTGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGATAGAGGTATACCTTGCAAAGAAATCAATAGAACAAGCAGTTTCTCTTGCTTATCCGGTGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAATATCTGCAATGGCGTAATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCGTTTCGAACAGTACCCTCTTCGTCAAGTTTTCCGAAGTTGGAAATATTATCATCTTCTGTCCATAGTAGTTTTTCAAATCTAAGTTGCAGCCCTTCCACTCCAACTAACATGCTTGAATATGACTCCTGTTCATTAAAATCAATGAGTGCTCCTTCGAGAAGTGAAGGTTTTCTTAATGCCATGGATGTTCAAGTTGCTGGAGGAGCGGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCCGACTTTTTGGCGGGTACCCTTTATGACACCATTGTATCTTATTTTAATATGTTACGTTGTGATTTGGAACCAGATTTCATAAAAGCTTCTGACAATGTGGCTGTGGGTGAACCCTTTCCATATAATTTGGATGATAGTCTTATTCTTCAGGAGCACCAATCTCCTTCAAAATTTAAGGGAAACAATTCTGGTCTTGACTGTTTTGCAAACATTACTCCACCTTCCAAGTCAGAAGCATCCCCTAAATCATTTTCTCATAGTAAAGTACTTGATGGTCTCCAGCAAGTTCTTAGTCAGGTTGAGAATGATTTCTTATGCATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGCAATGATTTATATACACTTAATCTTGGTGACAGCAGAGCAGTATTGGCAACATGCTGTACAGATAACAGAATGAATGGGAATGAGAGATTGAAGGCTATCCAGCTCACAGATTGTCATACCGTTGACAATGAAGCCGAAAGAGCTCGAGTTCTTGCTGATCATCCTGATGATCCTAAAACCATAGTAGCAGGGAAAGTGAAGGGAAAACTGAAGGTTACTCGAGCTTTAGGAGCAGGGTACTTGAAAAAGAAAATTCTGAATGACGCATTAATGGGAATCCTTCGAGTTCATGATCTCACAAGCCCACCATATATTTCAACTGATCCATCGTTGAATGTGCACAAAATCTCAGATTCTGACCAATTTGTGATAGTTGCGAGTGATGGTTTATTTGACTTCTTCAGTAATGATGAAGCAGTAGACCTTGTAGAGTCTTATATATTGAGAAATCCTTTTGGTGATCCAGCAAAATTTCTTATTGAGCAATTAGTTGCAAGAGCAGCTGATTCTGCAGGCTTCAGCATGGAGGAGTTGATGAATGTTCCCGACGGGAGGAGGAGGAAGTACCATGATGATGTGACGGCAGAAAATCTGCAGTCTCTTGGTTTCCTCACAGCTATTCTTTTTGTACTTACTGATAGAAAGTGA 1581 0.4016 MDFLDQEISMHSPEGELKISFGYQCNSDRGIPCKEINRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRTVPSSSSFPKLEILSSSVHSSFSNLSCSPSTPTNMLEYDSCSLKSMSAPSRSEGFLNAMDVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIVSYFNMLRCDLEPDFIKASDNVAVGEPFPYNLDDSLILQEHQSPSKFKGNNSGLDCFANITPPSKSEASPKSFSHSKVLDGLQQVLSQVENDFLCMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCCTDNRMNGNERLKAIQLTDCHTVDNEAERARVLADHPDDPKTIVAGKVKGKLKVTRALGAGYLKKKILNDALMGILRVHDLTSPPYISTDPSLNVHKISDSDQFVIVASDGLFDFFSNDEAVDLVESYILRNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTAENLQSLGFLTAILFVLTDRK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00204 526 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Vimu10g00204 526 PANTHER PROTEIN PHOSPHATASE 2C 144 487 IPR015655 GO:0004722|GO:0006470
Vimu10g00204 526 Pfam Protein phosphatase 2C 261 466 IPR001932 -
Vimu10g00204 526 CDD PP2Cc 149 506 IPR001932 -
Vimu10g00204 526 Gene3D - 106 507 IPR036457 -
Vimu10g00204 526 SMART PP2C_4 127 509 IPR001932 -
Vimu10g00204 526 SUPERFAMILY PP2C-like 149 506 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00204 Vimu-Chr10 1225912 1228323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00204 13 505 PP2C-type Phosphatase Gene Family AT3G16560 61.614 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00204 - - gmx:100791404 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00204 10 1225912 1228323 Vimu10g00204 10 1225912 1228323 ECH
Vimu7g01810 7 16513138 16515087 Vimu10g00204 10 1225912 1228323 PCT