Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00199 ATGGATTTGGTGGAGGAGAAGAGGAAGCAGCGAGAATTTGCATTAGTGTTGGTATCGGAGGTTTCTTCTTCTTCTTCATCCGCTTCGCCGGGTGTTGCTGTGTTCGCTGGTGACAGTCTTCAAATTCGGAACAAATATAACCGTATTCTTCTCAGTGCTCATCTCACAGATGTTCAGCCATTCAGGTTAGGTCCTATTGAATCTGTTTGCATGGTGGAAGGGTCTGATGCGGACAAACAGACATCGTATTCCAGTGGAGTCGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTGTATTCCAACAATGGAAGAAGGAATTCAATGTTCAAGGAACCTATTATGCTGCAGTTATTGAGAATCGCTCAGATTTTATGGGCCGCGTGGTAGTTGATGTTGGTGCCGGTAGTGGAATTTTGTCATTATTTGCTGCCCAGGCAGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATATGCACGGAAACTTATAGCTGGGAACCCAATACTTGGCCAACGAATTACAGTTATTAAAGGCAAAGTTGAGGATGTTGAACTGCCTGAGAGAGCTGATATTCTGATCTCTGAGCCCATGGGCACCTTGTTAGTCAATGAAAGAATGCTGGAGTCTTATGTCATTGCAAGGGATAGGTTTCTCACCCCTAATGGGAAAATGTTTCCTAGTGTAGGAAGGATTCACATGGCTCCCTTTAGCGACGAATATTTGTTTGTTGAAATTGCTAATAAGGCACTGTTTTGGCAGCAACAAAACTATTATGGCGTTGATTTGACGCCCTTACATGGTACTGCCTTTCAAGGATACTTTTCTCAGGTCCAATCCTCTTTTTCTCTCGAATTCCTTCTAACATACGCCTTTCTAATATGGGGTTCTTGTCTATCACTGTTTATGATCCCACATGCGAAACAGAAATCGCCTGTGGTCGATGCTTTTGATCCAAGGTTGTTAATAGGTGCTCCTATGTTCCATGTGATAGACTTTACCAAAATAAAGGAAGAGGAGCTATATGAAATTGACATTCCTCTTAGATTCATAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTACTGCGCGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCACAGCCAATATATGTTGTGGCAGGGCAAGAAATCACTGGCAGGATGCACTTGATTGCCCACACTGCTCAGAGTTATACAATCTATTTAACATTGTCAGCTAAAACATGGGGCCCTGGTGCTGAACAAGGAGGAATTCTTCAAACATCATCCTGTAAACTTGATCTGAAAGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATCCATTAAACCAAGATCAACAACCTCAAGTACTTCTACCGACACAGGATATAAACATCCAATCTCAAGATTTGGATGAGGTGGAGATGATGCAGCAGCCTTCGCCCAAGTCATGTGCTCAAATTGACTCCCTCATGCAGAATGCATAA 1563 0.4351 MDLVEEKRKQREFALVLVSEVSSSSSSASPGVAVFAGDSLQIRNKYNRILLSAHLTDVQPFRLGPIESVCMVEGSDADKQTSYSSGVAIQFRNEEESEAFHCVFQQWKKEFNVQGTYYAAVIENRSDFMGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPERADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQVQSSFSLEFLLTYAFLIWGSCLSLFMIPHAKQKSPVVDAFDPRLLIGAPMFHVIDFTKIKEEELYEIDIPLRFIATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRCVLSQPIYVVAGQEITGRMHLIAHTAQSYTIYLTLSAKTWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLNQDQQPQVLLPTQDINIQSQDLDEVEMMQQPSPKSCAQIDSLMQNA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00199 520 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 442 IPR029063 -
Vimu10g00199 520 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 115 451 IPR025799 GO:0016274|GO:0018216
Vimu10g00199 520 CDD AdoMet_MTases 133 233 - -
Vimu10g00199 520 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 76 436 IPR025799 GO:0016274|GO:0018216
Vimu10g00199 520 FunFam Probable histone-arginine methyltransferase CARM1 98 234 - -
Vimu10g00199 520 Pfam Ribosomal protein L11 methyltransferase (PrmA) 130 202 - -
Vimu10g00199 520 Gene3D - 236 478 - -
Vimu10g00199 520 Gene3D Vaccinia Virus protein VP39 95 234 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00199 Vimu-Chr10 1201448 1208538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00199 117 418 C2H2 Transcription Factor Family AT3G12270 30.581 4.23e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00199 10 1201448 1208538 Vimu10g00199 10 1201448 1208538 ECH
Vimu7g01805 7 16479139 16485002 Vimu10g00199 10 1201448 1208538 PCT