Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00197 ATGTCACCACGCTTTCAAATGCTTCATTTTAACATGTCTTCTTCCTCTCCACCTTCTTGGCTCACTTCACCTTCATGTTCCACTCTTGGCATAGATTCATCTTCTCCTACTGCTTTTCTTATAGTTCAGTGGTTAAGGTTTCTTCTTCTATCACCCTGTCCTCAACGAATTCTTCTATCTGTTGTTGATTTTATCTTCTTGCTCATTGTCTTAGCCTTTGCAGCTGTTAAACTCTATCCTAGATTCACTTCCCGTCACACGTCTTCCTCTTCTGTTACTAAACCCCTTTTGCAGGAGAAACGCTCTCACTATAAAGTCACCTTCTGGTTCAAACTAACCTTCTTGGTGACCACCCTTTTGCTCGCAGCTTATGCTGTTCTTAGCGTATTGGCCTTTCAAACCGGTCTTTCTTCATGGATAGTCATAGAGGCACTCTTTCGGCTCTTTCAAGCTGTGGCCAACATAGTGGTTGTGATCCTGTTGGTTCACGAGAACAAGTTCAAAGCTTCGGAGCACCCTTTATCGCTGAGAATGTATTGGATTGCAAACATGGTGGTTTCATGCTTTTTTGCCATTTCGGCTGTTGTTCGCTTTGTGGTTGTGGATGGAGCGAGGTTGGAGGTTAGTTTGAGAGTGGATGACGTGTTTTCTTTGGTTAATCTCCCATTTTCTGCGTTCCTTTTCGTTGTAGCAATGAAAGGAGTAACGGGGATTCAGGTGATTAGAACTTCTGATGAAGTGACAGCATATCAGAGCCTTTCCAATGAGAGAAATTTGAGTCCTTATGCTCATTCTTCGATTTTTTCCAAAACAGTGTGGCTTTGGATGAACCCTTTGCTGAAGAAAGGGTATCAAACACCCCTCAAGCTCGATGATGTGCCTTCTCTTCCTCTGGATTTCCAAGCAGAAAAGATGTCAGAGCTTTTCGAAAGCAATTGGCCGAAGGAAGAGGAAAACAGCAAGCACCCGGTTGGTGTCACCTTGTTTAGATGCTTTTGGAAGCGCATAGCTTTCACTGGCTTCCTTGCAGTTGTAAGACTTGCGGTTATGTACGTTGGTCCAATGCTTATTCAGAGTTTCGTTGACTTCAGCGCAAGGAAAGACAGCACCCCTCTTGAAGGACTTATTCTTATTCTGATCCTGTTTTTTGCAAAATCAGTTGAGGTCCTCGCTGTGCACCAATTCAACTTCAACTCTCAGAAACTAGGCATGTTAATCCGTTCCACCATCATAACTTCCGTGTACAAGAAGGGTTTAAGGCTTTCAAGTTCTTCAAGGCAGGCTCATGGCACTGGCCAGATTGTGAACCACATGGCCGTTGATGCACAACAGCTCTCAGATTTGATGTTGCAGTTTCATCCCATATGGATGATGCCACTACAAGTAATTGCAGCTTTGGCACTTATCTACAACAGTATAGGCGTGTCAGCGCTTGCAGCGCTTCTTGGAGCCAGTTTGGTGTTTGTTTTCACTCTCATTCGCACCAAGAAGAGCAATACATTCCAGTTCAGGATAATGAAGGGCCGTGACCTTAGGATGAAGGCCACGAATGAGTTGCTTAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAGTACTTTGGCAACAAGATTCAGCAGTTTCGCGAAGCCGAACACGGTTGGATTGGAAAGTTCTTGTACTACTTTGCCATTAACATGGGGGTTCTGGGCACTGCTCCTTTGTTGATATGTGTTCTCACATTTGGAGCTTCTGTTCTTCAGGGTGTTCCTCTGAACGCTGGCACAGTGTTCACAATCACTTCAGTGATCAAGATTTTGCAAGAGCCTCTGAGGACCTTCCCTCAGGCTCTCATCTTGATTTCCCAAGCGATGATATCTCTTGGGAGGTTGGATGAGTTCCTGATGAGCAAGGAAATGGATGAGGGCGCAGTGGAGAGATTGGATGGATGTGACGGTGACACCGCTGTGGAGATCAAAAACGGGGAATTCTCCTGGGATGATGCGGATGCAAATGTGGCTCTGAAAGTTGAAGAGTTGGAGATCAAGAGAGGAGAACATGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTACTGGCTTCTTTGTTAGGGGAAATGATCAAGATATCAGGAAAGGTTAGAGTTTGTGGGTCAATAGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCGTCCAAGACAACGTATTGTTTGGTTTACCAATGAACAGAGAGAAGTACGAAGAAGCTATAAGAGTGTGTTGCCTAGAAAAGGATCTTGAAATGATGGATTATGGAGACCAAACTGAAATTGGAGAAAGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTATACAACTTGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCACAAACTGGGTCATTCATTTTCAAGGAATGTATCACGGGGGCTCTAAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGACGTCTTGCATAACGTTGACTGTATTATGGTGATGAAAGAAGGGAGAGTCGTGCAAAGTGGGAAGTATGATGAACTTCTCAGTGCAGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGCAGAGTCTAGCGATAAAGGTGATGATGGTTCGATTCAGTCTCCGAAACTGACTCGACTCCCTTCAAAAGAAAAGGAAAAAGCAGGTGAAAATCAACCTCAAAATCAGGCTAAGTCAGCTAAAACCTCTGCAAAGCTCATTGAAGATGAGGAAAGAGAAACTGGTCATGTGAACCTTAAAGTTTACAAACACTACTTCACTGAAGCATTTGGGTGGTGGGGTGTTGTACTGATGCTGGCATTGTCTATAGCATGGATGTTGTCCTTCTTGGCGAGTGATTACTGGCTAGCAATTGGAACTGCAGAAGGCACTAACTTTACTCCTGCTACATTCATCACTGTGTATGCTTGCATAGCAGTTGGTGTAGCTGTTGTTGTGATGACAAGATCAATCATATTTACTTATTGGGGTCTAAAAACATCTCAAAGCTTCTTCAGTGGAATGCTTCAAAGCATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCCTCTGGGAGAATTTTGAGTCGTGTATCCACCGATATACTTTGGCTTGACATATCAATTCCAATGCTAGTGAATTACGTAATAATTTCATACTTATCAGTGATCAGCATCCTGCTTGTTACATGCCAAAATGCTTGGGAAACGGTCTTCCTCTTAATCCCACTGTTCTATTTTAATAACTGGTATCGGTGCATTTTGACACTTGCTAGCTCTGGTTTGCAGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCACCACTTTTCAGAATCCATTGCTGGTGTTATGACCATTCGTGGCTTCGGAAAACAGAACGCATTTTGCCAAGAAAATATTGACAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAACGGGGCCAATGAATGGCTTGGTTTTCGCTTGGACTACATGGGAGTGGTTTTCCTTAGCATTAGCACTGTTTTTATGATCTTTCTCCCAAGTTCTATCGTGAGGCCAGAATATGTTGGTATGTCTTTGTCCTATGGTTTGGCACTCAGCGGTCTTTTGTCATTGACTATAACAATGACTTGCAATGTCGAGAACAAAATGGTTTCAGTCGAGAGAATAAAGCAGTTCACCAACATTCCCTCAGAAGCGCCATGGAAAATGGCTGATAGCTCTCCTCCTAAGAATTGGCCCATCCATGGCTGCATTGAGTTAAACAATTTGCAGGTTCGGTATCGGCCAAATACTCCTATGATTCTCAAAGGAATCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACCCTCATTCAAGTGTTATTTAGGTTGATTGAACCTTCAGCTGGGAAAATATTTGTTGATGGGATCAACATTTGTACTGTTGGCCTTCATGATCTGAGATCTCGATTTGGAATTATCCCTCAAGATCCTGTTCTCTTTCAAGGAACAGTACGAAGCAACATTGATCCCCTTGGACTGTATTCAGAAGAAGAAATCTGGAAGAGCCTAGAACGTTGCCAACTGAAAGATGTGGTGGCTGCAAAACCTGAGAAACTTGAGGCTTCAGTGGTGGATGGTGGAGACAATTGGAGTGTGGGGCAAAGACAGCTTCTGTGCTTGGGAAGGATCATGCTAAAACGCGGCAAAATACTGTTCATGGATGAGGCAACAGCATCTGTTGATTCACAAACTGATGCTGTAATACAGAAAATCATCAGAGAGGATTTTGCAGATCGTACAATTATCAGCATTGCTCACAGAATACCTACAGTCATGGACTGTGACAAAGTTTTAGTTATTGATGCAGGGCTTTCAAAAGAATATGACAAGCCATCACGTTTGCTAGAAAGGCCTTCACTTTTTGCAGCATTGGTTAAGGAGTACTCCAATAGATCTGCATAA 4569 0.4351 MSPRFQMLHFNMSSSSPPSWLTSPSCSTLGIDSSSPTAFLIVQWLRFLLLSPCPQRILLSVVDFIFLLIVLAFAAVKLYPRFTSRHTSSSSVTKPLLQEKRSHYKVTFWFKLTFLVTTLLLAAYAVLSVLAFQTGLSSWIVIEALFRLFQAVANIVVVILLVHENKFKASEHPLSLRMYWIANMVVSCFFAISAVVRFVVVDGARLEVSLRVDDVFSLVNLPFSAFLFVVAMKGVTGIQVIRTSDEVTAYQSLSNERNLSPYAHSSIFSKTVWLWMNPLLKKGYQTPLKLDDVPSLPLDFQAEKMSELFESNWPKEEENSKHPVGVTLFRCFWKRIAFTGFLAVVRLAVMYVGPMLIQSFVDFSARKDSTPLEGLILILILFFAKSVEVLAVHQFNFNSQKLGMLIRSTIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWMMPLQVIAALALIYNSIGVSALAALLGASLVFVFTLIRTKKSNTFQFRIMKGRDLRMKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYYFAINMGVLGTAPLLICVLTFGASVLQGVPLNAGTVFTITSVIKILQEPLRTFPQALILISQAMISLGRLDEFLMSKEMDEGAVERLDGCDGDTAVEIKNGEFSWDDADANVALKVEELEIKRGEHAAVVGTVGSGKSSLLASLLGEMIKISGKVRVCGSIAYVAQTSWIQNATVQDNVLFGLPMNREKYEEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECITGALKNKTILLVTHQVDVLHNVDCIMVMKEGRVVQSGKYDELLSAGLDFGALVAAHESSMEIAESSDKGDDGSIQSPKLTRLPSKEKEKAGENQPQNQAKSAKTSAKLIEDEERETGHVNLKVYKHYFTEAFGWWGVVLMLALSIAWMLSFLASDYWLAIGTAEGTNFTPATFITVYACIAVGVAVVVMTRSIIFTYWGLKTSQSFFSGMLQSILHAPMSFFDTTPSGRILSRVSTDILWLDISIPMLVNYVIISYLSVISILLVTCQNAWETVFLLIPLFYFNNWYRCILTLASSGLQKYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRGFGKQNAFCQENIDKVNASLRMDFHNNGANEWLGFRLDYMGVVFLSISTVFMIFLPSSIVRPEYVGMSLSYGLALSGLLSLTITMTCNVENKMVSVERIKQFTNIPSEAPWKMADSSPPKNWPIHGCIELNNLQVRYRPNTPMILKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIFVDGINICTVGLHDLRSRFGIIPQDPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRGKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLSKEYDKPSRLLERPSLFAALVKEYSNRSA 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00197 1522 FunFam ABC transporter C family member 3 1265 1516 - -
Vimu10g00197 1522 CDD ABC_6TM_ABCC_D2 956 1257 IPR044726 GO:0140359
Vimu10g00197 1522 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 874 IPR003439 GO:0005524
Vimu10g00197 1522 FunFam ABC transporter C family member 5 919 1263 - -
Vimu10g00197 1522 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1245 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g00197 1522 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 337 617 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g00197 1522 SUPERFAMILY ABC transporter transmembrane region 953 1262 IPR036640 GO:0005524|GO:0016020
Vimu10g00197 1522 Gene3D ABC transporter type 1, transmembrane domain 918 1263 IPR036640 GO:0005524|GO:0016020
Vimu10g00197 1522 Gene3D ABC transporter type 1, transmembrane domain 324 632 IPR036640 GO:0005524|GO:0016020
Vimu10g00197 1522 Gene3D - 633 892 IPR027417 -
Vimu10g00197 1522 MobiDBLite consensus disorder prediction 882 925 - -
Vimu10g00197 1522 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1282 1516 IPR003439 GO:0005524
Vimu10g00197 1522 Pfam ABC transporter 673 802 IPR003439 GO:0005524
Vimu10g00197 1522 SMART AAA_5 678 851 IPR003593 GO:0016887
Vimu10g00197 1522 SMART AAA_5 1308 1493 IPR003593 GO:0016887
Vimu10g00197 1522 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524|GO:0016887
Vimu10g00197 1522 CDD ABCC_MRP_domain1 651 851 - -
Vimu10g00197 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 869 IPR027417 -
Vimu10g00197 1522 Gene3D - 1265 1516 IPR027417 -
Vimu10g00197 1522 CDD ABCC_MRP_domain2 1280 1500 - -
Vimu10g00197 1522 SUPERFAMILY ABC transporter transmembrane region 328 625 IPR036640 GO:0005524|GO:0016020
Vimu10g00197 1522 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 263 1518 - -
Vimu10g00197 1522 Pfam ABC transporter transmembrane region 338 605 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g00197 1522 Pfam ABC transporter transmembrane region 972 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g00197 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1271 1515 IPR027417 -
Vimu10g00197 1522 FunFam ABC transporter C family member 10 320 633 - -
Vimu10g00197 1522 Pfam ABC transporter 1299 1447 IPR003439 GO:0005524
Vimu10g00197 1522 FunFam ABC transporter C family member 4 634 892 - -
Vimu10g00197 1522 CDD ABC_6TM_ABCC_D1 338 625 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00197 Vimu-Chr10 1182672 1190347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00197 636 900 Calmodulin-binding Proteins AT2G36910 31.597 2.15e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00197 - K05665 vra:106762025 2743.76