Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g00195 | ATGCAGGAAGCCATGTCCAAAAAGAAGGTTTTTGGTTATAACTCACAAGAAGCAGAGGTTAGGGTTTCTCTCTCTTCTTCTCTCGGGCATTCTCCTTCTTCCGCCATAATTCGTCGCGCTCACTCCTTCCAACGACGCCGCTTCAGATCTGAATCGCCGCCGTTTCGGAGATCCACAGTGCCGGCATTCTCCATCTTGAAAATTGGCGCCTCAACGACGTTCGCAGCGCCACGCGAGTGGCCAGATGCCGCAGGGCAATGCCGCCGCCGCCGCTCTGTTAGACCACGGCGGCGATGCTGGAGACGCCGTCATGGCGCGGTGGCTCCAGTCCGCCGGCTTGCAGCATCTCGCCTCTCCCCTAGCTTCTACCGCCATCGATCATCGCCTCCTCCCCAACCTTCTCATGCAGGTGTTATATTATTCTATATGATTCTTCTGCTGTCCTGCTTTTTGAGGGGTGATCATGGTACGGGTTATGGAGCACAGTCTGCTGAGGAGAAGCAGAGGCTTTTGAAGTTGATGAGAAACCTCAATTTTAATGGGGAGTCTGGTTCAGAGCCATATACGCCCACCGCCCAATCTTTAGGTGGAGTGACTGGGTCGGATGGGTTTTATTCTCCTGAGTTCAGGGGCGATTTTGGAGCTGGGCTTTTGGATCTTCATGCTATGGATGATACGGAGCTTTTGTCTGAGCATGTAGTTTCAGAACCTTTTGAGCCATCGCCCTTCATGCCTGGAGATGCTAGAGTATTTGAAGACGATTTTTATCCAATTAACAACAAGCTGGAAAGTGGGGAAGCAGATGCTGACACATCAATTTCCGTACCAATCAATGAAAAAGAGTACAGCACTAGGGAAAATAGTGTTGCTAAAATTAGAGTTGTGGTACGCAAAAGACCATTAAACAAGAAGGAGCTAGCTAAGAAGGAGGATGATATTGTAACTGTATCTGACAATGCATATCTGACAGTCCATGAACCCAAACTAAAGGTTGATTTGACAGCTTATGTGGAGAAGCATGAGTTTTGTTTTGATGCTGTGCTTGATGAGCATGTTACCAATGATGAAGTATACAGAACTACTGTTGAACCAATTATTCCTACAATTTTCGAGCGAACTAAAGCTACCTGTTTCGCTTATGGTCAGACAGGTAAAAGGAATTTGTATGCTATTGATGTTATACTAGCCTATCGGATCTGCCATTATTGTAGTCTCAAGACTTGGGTAATTCGGTCCACATCAGTTAGAGATATGATCAGTGTAGCCCGTGTAGACTTGGATAGTTCTTACAAACCTTTTTTCAGAGGGTTGGAAGATATTAATGGCCCTGCTGTAGATACAGTTGATATTTTGCATCCAATGATAGATGAGATTCATATAAAAATGTTCGTTTCATGTTCCATTGATATGCTTGATCCTCAAGCAGCTACCACACCTTTATTAGCTGCTGAAGACCTTGTTCGACAATTGCATCAGCCAGTTTACCGGAATCAGAGATTTAAGTTGTGGCTCAGCTATTTTGAGATATACGGAGGAAAACTTTATGATCTTCTTAGTGACAGAAAGGAAGATGGACGACAGCAGGTTTGCATTGTAGGACTGCAAGAATTTGAAGTTTCTGATGTCCAAATTGTCAAAGAATTCATTGAAAGGGGAAATGCTGCAAGAAGTACAGGATCCACTGGTGCCAATGAGGAGTCCTCCAGGTCACATGCTATCTTACAACTGGTTGTAAAGAAACACAAGGAAGTGAAAGAGAGCAAGCGAAACAATGATGGGAATGAGGCAAGAAGTGGGAAGGTTGTGGGGAAAATTTCTTTTATTGATCTTGCTGGAAGTGAACGAGGTGCTGACACTACTGATAATGATCGTCAGACACGCCTTTTGGCTTTGAAGGAGTGCATCCGTGCTTTAGACAATGATCAAATTCATATTCCATTTCGGGGAAGTAAACTCACTGAAGTGCTTCGGGACTCTTTTGTCGGTAACTCAAAGACTGTAATGATCTCTTGTATATCTCCAGGTGCTGGATCTTGTGAACACACGCTTAATACCTTGAGATACGCAGATCGTGGGAATCCTAGAAAAGACCAGGTCCTAAATCCTGCTCCACAAACCAATAAGGAGATTTCATCCACATCATCTATTCCAGTTAGTGCTGGTGCAGAGGATTTTAACCATCAACGTCAAGAGAAAACAATGGACATAGGCAGGAAATTTGTTGAAAGGGAAAATTCTTCGTACAGCTCTGCTGCTACTGCTGTTGACAAACAGCCATTAAGTTTTTCTTCAAGTTATCTATCAAATGGCCGAGAGGAGAAAGGCTTGCCTTCTGCTTTATTGGACCGGGAGAGGTCTGAACTGAAGAACTCGTATGGTGACTCCACCAGTCAAAAGATGAACTCTTACTCACAAATTGATACAGGTGAGAAATTGCAAAAGGTGTCTCCGCCACGCAGAAAAGGGTCTAAGGATGAAAAATCTGAAAGGCCTACAAATTGGATGAAAAGGGATGCCAATGGTTCTGATCCCTTCACTACAAGCTCCAAGCAGCAGAGCACGGGGAACTCTAACACCGTGTCTGTGTCTAAGGATGAAAAGTCTGATAGGCCTTCAAACTGGATGAAAAGGGATTCCAGCAGTTCGGATCTTTTCACTACAAGCTCCAAGCAGCAGAGCACAGGGAATAATGTATCTAAGGATGAAAAATCTGAAAGGCCAGCAAACTGGATGAAACGGGATGCCAGCAACTCCGGTGTGTTCTCTACAAGCTCCAAGCAGCCGAGCACAGGGAACTATAGCAATATTACGACTGGATCCAGGCCTTATGAAGGAGAGTCCTCTCCTAACGGGAATATCAATGCAGTACTTGAGGAGGAAGAAGCTCTCATTGCTGCTCATAGGAAGGAAATTGAGGATACAATGGAGATTGTTCGTGAAGAAATGAAACTCCTGGCAGAGGTGGACCAACCAGGAAGCCTTATTGACAACTATGTAACTCAATTGAGTTTTGTGCTTTCTCGCAAAGCAGCGGGTCTGGTGGGTCTTCAAGCTCGTCTTGCAAGATTCCAACATCGACTAAAAGAGCAGGAGATTCTAAGTAGAAAAAGAGTACCGCGTCAGTAA | 3126 | 0.4475 | MQEAMSKKKVFGYNSQEAEVRVSLSSSLGHSPSSAIIRRAHSFQRRRFRSESPPFRRSTVPAFSILKIGASTTFAAPREWPDAAGQCRRRRSVRPRRRCWRRRHGAVAPVRRLAASRLSPSFYRHRSSPPPQPSHAGVILFYMILLLSCFLRGDHGTGYGAQSAEEKQRLLKLMRNLNFNGESGSEPYTPTAQSLGGVTGSDGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVVSEPFEPSPFMPGDARVFEDDFYPINNKLESGEADADTSISVPINEKEYSTRENSVAKIRVVVRKRPLNKKELAKKEDDIVTVSDNAYLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVTNDEVYRTTVEPIIPTIFERTKATCFAYGQTGKRNLYAIDVILAYRICHYCSLKTWVIRSTSVRDMISVARVDLDSSYKPFFRGLEDINGPAVDTVDILHPMIDEIHIKMFVSCSIDMLDPQAATTPLLAAEDLVRQLHQPVYRNQRFKLWLSYFEIYGGKLYDLLSDRKEDGRQQVCIVGLQEFEVSDVQIVKEFIERGNAARSTGSTGANEESSRSHAILQLVVKKHKEVKESKRNNDGNEARSGKVVGKISFIDLAGSERGADTTDNDRQTRLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRGNPRKDQVLNPAPQTNKEISSTSSIPVSAGAEDFNHQRQEKTMDIGRKFVERENSSYSSAATAVDKQPLSFSSSYLSNGREEKGLPSALLDRERSELKNSYGDSTSQKMNSYSQIDTGEKLQKVSPPRRKGSKDEKSERPTNWMKRDANGSDPFTTSSKQQSTGNSNTVSVSKDEKSDRPSNWMKRDSSSSDLFTTSSKQQSTGNNVSKDEKSERPANWMKRDASNSGVFSTSSKQPSTGNYSNITTGSRPYEGESSPNGNINAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLSFVLSRKAAGLVGLQARLARFQHRLKEQEILSRKRVPRQ | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g00195 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 278 | 691 | IPR027417 | - | |
| Vimu10g00195 | 1041 | SMART | kinesin_4 | 289 | 706 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 791 | 811 | - | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 915 | 949 | - | - | |
| Vimu10g00195 | 1041 | Gene3D | Kinesin motor domain | 469 | 698 | IPR036961 | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 699 | 721 | - | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 787 | 949 | - | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 813 | 836 | - | - | |
| Vimu10g00195 | 1041 | ProSiteProfiles | Kinesin motor domain profile. | 291 | 695 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | Pfam | Kinesin motor domain | 297 | 691 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | ProSitePatterns | Kinesin motor domain signature. | 603 | 614 | IPR019821 | GO:0003777|GO:0005524|GO:0007018 | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 691 | 730 | - | - | |
| Vimu10g00195 | 1041 | Coils | Coil | 957 | 988 | - | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 877 | 898 | - | - | |
| Vimu10g00195 | 1041 | CDD | KISc_KIF2_like | 291 | 691 | - | - | |
| Vimu10g00195 | 1041 | PRINTS | Kinesin heavy chain signature | 645 | 666 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | PRINTS | Kinesin heavy chain signature | 372 | 393 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | PRINTS | Kinesin heavy chain signature | 561 | 578 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | PRINTS | Kinesin heavy chain signature | 604 | 622 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Vimu10g00195 | 1041 | Coils | Coil | 1013 | 1033 | - | - | |
| Vimu10g00195 | 1041 | MobiDBLite | consensus disorder prediction | 839 | 862 | - | - | |
| Vimu10g00195 | 1041 | Gene3D | Kinesin motor domain | 270 | 390 | IPR036961 | - | |
| Vimu10g00195 | 1041 | PANTHER | KINESIN-RELATED PROTEIN 6 | 155 | 1038 | IPR027640 | GO:0003777|GO:0007018 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g00195 | Vimu-Chr10 | 1154912 | 1166580 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu10g00195 | 500 | 691 | Calmodulin-binding Proteins | AT5G65930 | 34.450 | 8.09e-22 | 100 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g00195 | K10393 | - | gmx:100800014 | 916.376 |