Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00191 ATGGAAGGTAACAAGGACGAAGCATTGCGCTGCGTTCGGATCGCCGAGGAAGCAATCGCGTCGGGGAACAAAGACCGCGCCGTCAAATTCCTCAGAATCGCTAAGCGACTAAACCGCGATTTGCCGATTCAATCATTGCTACAGAAGTGCGAGGGTCTTGATTCTCAGTCCTCCGCCACTGCCGCTCACGGCGCACAGGCCACCGGTACTTCTTCGCGGGGCGAACGTTTGAACGGGGAGAGGAGTCACGCGAGTTACACGGAGGAGAACGTTCGGTTGATTAGGGAAATCAAAGGAAAGAGCGACTACTACGCGATACTTGGATTGGAGAAGAGCTGCTCCGTCGAAGAGATTCGGAAAGCGTATCGGAAGCTCTCGCTGAAGGTTCATCCTGATAAGAACAAAGCTCCCGGCTCAGAAGACGCATTCAAGAAAGTCTCGAAGGCTTTCAAGTGTTTGAGCGATGACGGTTCTAGAAGGATGTATGACCAGACCGGAACCGTCGATGATTTCGACCACGGCGAGGTGAACGCCTTCCGGCGGAGGAGGAGAAGGACGACGACGGCAACAACGACGCGCGATTTCTTTGAAGACGAGTTCGATCCCGACGAAATATTTAGGGCTTTCTTCGGACACTCCGATGTGTTTGGGAGGAACCATGTTTTCAGGCCCCGCGGCATGGGGAATCCCCATAGGACTGAGGTTAACGATGGATCGGGAGGGAGGCATCATAATGTTATGCTTCTGATTCAGCTTTTGCCGCTTTTGATTATTATTCTTCTCGCGTACTTGCCGTTTTCTGAGCCTGAGTATTCCTTGCACAAGCATTACAACTACCAGATTCCGAAAACGACTGAGCTGCACGGGGTGCAGTTCTTCGTGAAATCGCAGGATTTTGAAGGGAATTATCCGGTGGGGAGTGATGCTCGTGTGGCGGTTGAGGAAAGTGTGCTAAAGGATTACAGGAGTATGCTTCGGAGATACTGTCAGGTGGAGATGCAGAGACGGAGTTGGAATAGGAATCTGCCTACACCTCACTGTGATAAGCTGCAGAACTTTGCAGTCATGGCATGA 1074 0.5168 MEGNKDEALRCVRIAEEAIASGNKDRAVKFLRIAKRLNRDLPIQSLLQKCEGLDSQSSATAAHGAQATGTSSRGERLNGERSHASYTEENVRLIREIKGKSDYYAILGLEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRMYDQTGTVDDFDHGEVNAFRRRRRRTTTATTTRDFFEDEFDPDEIFRAFFGHSDVFGRNHVFRPRGMGNPHRTEVNDGSGGRHHNVMLLIQLLPLLIIILLAYLPFSEPEYSLHKHYNYQIPKTTELHGVQFFVKSQDFEGNYPVGSDARVAVEESVLKDYRSMLRRYCQVEMQRRSWNRNLPTPHCDKLQNFAVMA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00191 357 ProSiteProfiles dnaJ domain profile. 102 166 IPR001623 -
Vimu10g00191 357 MobiDBLite consensus disorder prediction 58 75 - -
Vimu10g00191 357 Pfam Domain of unknown function (DUF1977) 267 337 IPR015399 -
Vimu10g00191 357 CDD DnaJ 102 155 IPR001623 -
Vimu10g00191 357 MobiDBLite consensus disorder prediction 58 84 - -
Vimu10g00191 357 SUPERFAMILY Chaperone J-domain 98 169 IPR036869 -
Vimu10g00191 357 PANTHER AT29763P-RELATED 1 352 - -
Vimu10g00191 357 SMART dnaj_3 101 158 IPR001623 -
Vimu10g00191 357 FunFam Chaperone protein dnaJ 49 98 221 - -
Vimu10g00191 357 Gene3D DnaJ domain 99 220 IPR036869 -
Vimu10g00191 357 PRINTS DnaJ domain signature 122 137 IPR001623 -
Vimu10g00191 357 PRINTS DnaJ domain signature 138 158 IPR001623 -
Vimu10g00191 357 PRINTS DnaJ domain signature 158 177 IPR001623 -
Vimu10g00191 357 PRINTS DnaJ domain signature 104 122 IPR001623 -
Vimu10g00191 357 Pfam DnaJ domain 102 163 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00191 Vimu-Chr10 1143130 1144203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00191 97 163 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.620 2.29e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00191 K09518 - gmx:100820432 530.406