Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00188 ATGAGTCCCGCGAGTTACACGGAGGATGACGTTCGGTTGATTAGGGAAATCAAAGGAAAGAGCGACTACTACGCGATTCTTGGATTGGAGAAGAGCTGCTCCGTCCAAGAGATTCGGAAAGCGCATCACGAGCTCGCGCTGAAGGTTCATACCGATAGGAACAAAGCGCCGGGCTCACAAGACGCGTTCAGTAAAGTCTCAGAGGCTTACCAGTGTTTGAAGGATGAGGATTCTAGAAGGAAGTATGATCAGACCAGACCCGTCGAAGATTTCGACTACCGGCTGAGGAGGAGGCCTCCTCCTCCTCCTCCTCCGTCCAGCGGCATTGGAAATCCCAAAAAGAGTAAGGTTAACGATGGATGGGGAGGGAAGCATCACAATTTTGTGCCTCTGATTCTGCTTTTGCCGCTGTTGATGGTTATTCTGTTCGCGTGCTCGCCGTTTCTGAGCAGGGTATTCCTTGCTCTGATTTAA 474 0.5084 MSPASYTEDDVRLIREIKGKSDYYAILGLEKSCSVQEIRKAHHELALKVHTDRNKAPGSQDAFSKVSEAYQCLKDEDSRRKYDQTRPVEDFDYRLRRRPPPPPPPSSGIGNPKKSKVNDGWGGKHHNFVPLILLLPLLMVILFACSPFLSRVFLALI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00188 157 PRINTS DnaJ domain signature 24 42 IPR001623 -
Vimu10g00188 157 PRINTS DnaJ domain signature 58 78 IPR001623 -
Vimu10g00188 157 PRINTS DnaJ domain signature 42 57 IPR001623 -
Vimu10g00188 157 MobiDBLite consensus disorder prediction 75 117 - -
Vimu10g00188 157 SUPERFAMILY Chaperone J-domain 18 90 IPR036869 -
Vimu10g00188 157 ProSiteProfiles dnaJ domain profile. 22 86 IPR001623 -
Vimu10g00188 157 SMART dnaj_3 21 78 IPR001623 -
Vimu10g00188 157 Pfam DnaJ domain 22 83 IPR001623 -
Vimu10g00188 157 Gene3D DnaJ domain 19 125 IPR036869 -
Vimu10g00188 157 PANTHER AT29763P-RELATED 5 97 - -
Vimu10g00188 157 CDD DnaJ 22 75 IPR001623 -
Vimu10g00188 157 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Vimu10g00188 157 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00188 Vimu-Chr10 1133696 1134169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00188 20 86 C2H2 Transcription Factor Family AT1G74250 36.986 8.36e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00188 K09518 - vum:124826801 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00188 10 1133696 1134169 Vimu10g00188 10 1133696 1134169 ECH