Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00171 ATGGCTCAAGAGGGAGGAAACGAAGCCATACCAAAATTCAAAGAAAGAAGCCCAATCCCACAAGATTTCGATGAAAAGAGTTACAATCTCAGCGGAAAAATCATGCTTTCTGCCATCGTTGTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCCCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCACCGCCACCGCGAGCTCATCCGAACACAGCTCGTGTTCAACAACGAAGCCAACACCCCCGCCGCGGTCTCCCGCGGCCTCGACGCTGCCGTCCTCGCCTCGCTACCCGTGTTCATGTACGACCCCAAGGCACACCGGGAAAACGTGCCGGAATGCGCGGTTTGTTTGTCTGAGTTCGAACTGGGAGAACCGGGTCGGGTCTTACCGAAGTGTAACCACAGCTTCCACACAGACTGCATCGACATGTGGTTTCACTCCCACGCCACGTGTCCGCTTTGTCGCGCACCGGTCGAGCGCGCGGCCGAACCGGAGGTTGTTATAACTGTTAGCGAACCGGAGTCCGGTTCGGAGGAGAACGTAACCGGTTCTACCTCTTGTCCTTCCTCTTCGGTTGGTTCTAGGAAATCGTCGTTGGTTGGTGTGACCATTGAGGTGCCTCCGCGGGACGAGAATTTGCGTGACGAGAATACGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTACTAGGATTCTTAACAGGGAACGGAGGGTAAACACGTCCCCATCGTCTAGCGGCGGTGATTGTAGCTCCGCCGCCCAGTGCGAGGCCGAGGTGGGCGAGAGGAGACCCAGTGAGTCTTGA 834 0.5647 MAQEGGNEAIPKFKERSPIPQDFDEKSYNLSGKIMLSAIVVLFFIVILMLCLHIYARWYLRRARRRQLHRHRELIRTQLVFNNEANTPAAVSRGLDAAVLASLPVFMYDPKAHRENVPECAVCLSEFELGEPGRVLPKCNHSFHTDCIDMWFHSHATCPLCRAPVERAAEPEVVITVSEPESGSEENVTGSTSCPSSSVGSRKSSLVGVTIEVPPRDENLRDENTSSFRSPMSRMLSFTRILNRERRVNTSPSSSGGDCSSAAQCEAEVGERRPSES 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00171 277 MobiDBLite consensus disorder prediction 180 205 - -
Vimu10g00171 277 MobiDBLite consensus disorder prediction 179 206 - -
Vimu10g00171 277 FunFam RING-H2 finger protein ATL3 86 167 - -
Vimu10g00171 277 SUPERFAMILY RING/U-box 102 167 - -
Vimu10g00171 277 MobiDBLite consensus disorder prediction 240 277 - -
Vimu10g00171 277 MobiDBLite consensus disorder prediction 240 261 - -
Vimu10g00171 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Vimu10g00171 277 CDD RING-H2_EL5-like 119 162 - -
Vimu10g00171 277 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 169 IPR044675 -
Vimu10g00171 277 SMART ring_2 120 161 IPR001841 -
Vimu10g00171 277 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vimu10g00171 277 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00171 Vimu-Chr10 1020171 1021004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00171 26 271 Rapid Response to Elicitors AT3G16720 48.561 5.63e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00171 - - gmx:100791545 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00171 10 1020171 1021004 Vimu10g00171 10 1020171 1021004 ECH
Vimu7g01778 7 16306465 16307133 Vimu10g00171 10 1020171 1021004 PCT