Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00168 ATGGGTGAAGGTAGGAATCGAAACCCAAAGAAAAGGTTCGCCATTCTTGGCGTGTCTTCGATCCTCCTTGTGGCTGTGGTGGCTGTGATAGCTGTTACTTTAAACCAAGGAGAAGTAGCTGAAGATGAATCAGCTCGTATCGCTAGTTCTCAAAGGACAAGTGTAGACATACTTTGCCATTCAACAGAATACGCGAAAACCTGCAAGAAAAGCCTTCAACATGTAGCTGCCAACGGAACCACAGACACAAAGACTCTGGTGAAAGCTGCGATCAATGCAACAGCAATGGAACTTTTGAGCCACATAAGGAACTCATCCCTTTATAAAGACTTGGGGAAGGACAACATGACAAGACAAGCCGTGGATATTTGTAAGGAAGTGTTTCAGTATGCGATTAATGGCATTCAGAAATCTGCTGATACGATAGACAAGTTTGAATATGGGAAGTTGAGTGAATATATTTATGACCTAAGGGTTTGGGTCGCGGGGAGTCTCACTCACCAGCACACGTGCTTGGATGGTTTTGTGAACACGAGCACGAAGGCTGGTGAGACAATGACTAGGGTTTTGAATACCTCTTTGGAGCTTAGCAGCAATGCGTTGGATATTTTGAACGTGATCTCTGGTGTGATGAAGGACCTTAACATGAGCTCATTTGGCAATAGGAGGCTTCTCTCTGAGGACACACCAACCTTGCATGATTATCCTTCGTGGGTGACTGAAGAAAAACGGCGTCTTCTTGAGATGGGAACTGAAAATCCTGATGCAGTTGTGTCCCAAGATGGTTCTGGCCAATTTAAATCTATCAATGAAGCTCTTCAGTCTGTTCCTGCTAACAATGAAAAACCTTTTGTGATTTACGTCAAAGAAGGTGTGTACAGGGAAAATGTTGAAATGTCTGTACTAATGACTCATGTCACAATCATCGGAGATGGTCCAACAAAGACCAGAATCAGTGGTAGTTTAAACTACGATGATGGCGTCCAAACCTACAAAACTGCAACTTTTGCGGTTAATGCTCCAAACTTCATGGCGAAGGATGTCGGGTTTGAGAACACGGCAGGGTCTGAGAAACATCAAGCAGTGGCACTGCGAGTAACAGCAGACCAAGCTGTGTTTCTGAATTGCCACATGGATGGGTTCCAAGACACCCTATATGCTCAGTCACAACGCCAATTCTACCGTGATTGCTCCGTGACTGGGACGGTTGATTTTGTGTTTGGAGATGCCGTTGGAGTGTTCCAAAACTGCACGCTAATTGTGAAAAAACCGTTGGGCAAACAACGGTGCATGGTGACAGCTGGTGGGAGAGTGAAATCCGACAGCCCGACTGCCCTAGTTTTCCAAGGTTGTCTGTTCACAGGAATGCCGGAAATGTTTAGCATGCCACAAAAGGTAACATACCTAGGAAGGCCATGGAGGGCATACTCTAAGGTAATCATCATGGACTCCCAACTTGACGACATCTTCTTACCAGAAGGGTACATGGGGTGGATGGGAACTGATTTCATGGACACTTGTACATACTTAGAGTACAATAACAGAGGCACTAATGCTGACACTTCACTTAGAGTTAAATGGCCTGGTGTTAGGAGTCTAACAGCAGAAGAAGCAGCTGATTATTATCCTTCCAGGTTCTTTGAACTTTATTCTCCAAATGATGGTGATTGGATTGTTAGATCTAGGGTACCCTACAGTCTTGGTCCTTCTCCCAGTAGCTAG 1722 0.4489 MGEGRNRNPKKRFAILGVSSILLVAVVAVIAVTLNQGEVAEDESARIASSQRTSVDILCHSTEYAKTCKKSLQHVAANGTTDTKTLVKAAINATAMELLSHIRNSSLYKDLGKDNMTRQAVDICKEVFQYAINGIQKSADTIDKFEYGKLSEYIYDLRVWVAGSLTHQHTCLDGFVNTSTKAGETMTRVLNTSLELSSNALDILNVISGVMKDLNMSSFGNRRLLSEDTPTLHDYPSWVTEEKRRLLEMGTENPDAVVSQDGSGQFKSINEALQSVPANNEKPFVIYVKEGVYRENVEMSVLMTHVTIIGDGPTKTRISGSLNYDDGVQTYKTATFAVNAPNFMAKDVGFENTAGSEKHQAVALRVTADQAVFLNCHMDGFQDTLYAQSQRQFYRDCSVTGTVDFVFGDAVGVFQNCTLIVKKPLGKQRCMVTAGGRVKSDSPTALVFQGCLFTGMPEMFSMPQKVTYLGRPWRAYSKVIIMDSQLDDIFLPEGYMGWMGTDFMDTCTYLEYNNRGTNADTSLRVKWPGVRSLTAEEAADYYPSRFFELYSPNDGDWIVRSRVPYSLGPSPSS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00168 573 Gene3D - 253 569 IPR012334 -
Vimu10g00168 573 FunFam Pectinesterase 4 252 569 - -
Vimu10g00168 573 SMART PMEI_2 50 203 IPR006501 GO:0004857
Vimu10g00168 573 Pfam Pectinesterase 255 547 IPR000070 GO:0030599|GO:0042545
Vimu10g00168 573 NCBIfam pectinesterase inhibitor domain 42 207 IPR006501 GO:0004857
Vimu10g00168 573 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vimu10g00168 573 SUPERFAMILY Pectin lyase-like 253 547 IPR011050 -
Vimu10g00168 573 PANTHER PECTINESTERASE 22 558 - -
Vimu10g00168 573 FunFam Pectinesterase 51 208 - -
Vimu10g00168 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Vimu10g00168 573 CDD PMEI-like_3 58 209 - -
Vimu10g00168 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Vimu10g00168 573 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Vimu10g00168 573 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00168 Vimu-Chr10 1000844 1012391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00168 10 568 Carbohydrate Esterase AT3G05610 42.226 1.88e-167 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00168 K01051 - gmx:100784682 746.117