Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00162 ATGGCTTCAAGCGTTATTATTGCTCATTTCGAGGGCGCAGCACCGTCTCCATCCAAACCAACCACGTTCCGCCACGTCACCACCCCTCAGTCTCCACCGTCTGATCACCACACACCATTCTATGATTCTGGTCTCAGTGCCAGTACTTGTTATTCTCCGAAGAAGAAGAAGAAGAAGATGTGTGGAGGTGCAATTATTTCCGACTTCATTGGTGTCAAGCGTGACCGTAACGTCGCCGCGGAGCAACTGTGGTCCGAGCTAGACCCTTTCTCTGACCTCCTCGGCTTCGACACCACCACCATCACCACTTCCAAACGCCAACCACCCTTCCCCGTAATTTCAGACAAAAAGGTGGAATCATGTGCCAAGAAGAAGAAAAGCGTGGATGCAGGGAAGAAGACTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTTTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCAAACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCACCACCCTCCAAGAAACGCTGCCTCAGCCCCGACCTCCCTCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGTCTCCTACAGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTCAAACAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTCGAGTGGGACAACGGTAATTACATGATGGATGACTTGTGGATGTTCGACGACGTCGTTGTGGCCAACCGTAATCTAGTTTATTAG 876 0.5457 MASSVIIAHFEGAAPSPSKPTTFRHVTTPQSPPSDHHTPFYDSGLSASTCYSPKKKKKKMCGGAIISDFIGVKRDRNVAAEQLWSELDPFSDLLGFDTTTITTSKRQPPFPVISDKKVESCAKKKKSVDAGKKTERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDDTPPPSKKRCLSPDLPQQSSSSSTAPPPSAVSYSGDSSGGEELDLKQLELFLGLENEQPLPNNGVEWDNGNYMMDDLWMFDDVVVANRNLVY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00162 291 MobiDBLite consensus disorder prediction 211 235 - -
Vimu10g00162 291 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
Vimu10g00162 291 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 SMART rav1_2 141 204 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 FunFam Ethylene-responsive transcription factor 2 140 199 - -
Vimu10g00162 291 ProSiteProfiles AP2/ERF domain profile. 141 198 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 MobiDBLite consensus disorder prediction 12 39 - -
Vimu10g00162 291 MobiDBLite consensus disorder prediction 192 240 - -
Vimu10g00162 291 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 MobiDBLite consensus disorder prediction 20 39 - -
Vimu10g00162 291 Pfam AP2 domain 141 190 IPR001471 GO:0003700|GO:0006355
Vimu10g00162 291 Gene3D AP2/ERF domain 141 199 IPR036955 GO:0003700|GO:0006355
Vimu10g00162 291 PANTHER DNA-BINDING DOMAIN 119 228 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00162 Vimu-Chr10 951459 953425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00162 60 285 AP2-EREBP Transcription Factor Family AT3G16770 46.038 3.72e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g00162 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00162 K09286 - gmx:100779626 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00162 10 951459 953425 Vimu10g00162 10 951459 953425 ECH
Vimu7g01767 7 16260868 16262386 Vimu10g00162 10 951459 953425 PCT