Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00161 TTGAAACGTGTCGCGTTCGATTACCTAATCGCTCCCTATCGCCGGCGACGTCGATTCAATTTCAATGGCCACGGAGCAGTTGATGTCCAGTGGCGGTCCTCGCTACGTTCAGATGAAATCCTCGCCACCGCCGTCTCCGCCGGCTGCGACTGCCGAGGAGATGTCGTCGGTTCCGTCGTTCCGGCACAGCGGCGCCGAGGCCAATCGGATTTTCGAGGAATTGCCGAAAGCCTCCATCGTCTCCGTGTCTCGCCCGGACGCCAGCGATATCAGCCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAGACAGGTAACGTGCCATCTCGTCTCACACTCACTGTGTTCGTGATTTCGTGGAATTCAATTCTAAATAAAATGGAAATCTCTGATCGCAAGCACTGGTGCCAATTGTGTGAAGCTAAAGCGTGCGAAATCCAAGCGAATTGGATCCTTTATTTGAATCCGGTTACTTCTTCATACGCCGTGTTTGTACGTGTATACGTACAACTACACTTTAAGCTTTGCGCATTTACTTCTGCTGTTCACCGGCTTTGGAGTTGTTTAGAGTCGAAAGAAGCATTGTTTGTTAAATATTTATTTCTTTCGGTCTTCATTCCTACGGGAGGATACTTATATATCTCATTTGCATTCCAGTTCAAGTGGGAGTTAATGAAGAAAGCTCATCAAGTATTTATTTTGCATTTCGCATTAAAAAAACGTGCCTTCATTGAGGAAATCCATGAGAAGCAGGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACAATGCTATGGAGCAAGATGACGATGAAGGTGATGATGAAACAATCCCATTGCATACTGATGAAACTCATGAAAGTGCTAGGGACAGAGATGTTCCATCAAGTGCTGCTCTACCAATTATACGACCAGCCTTGGGAAGACAGCAGTCTATTGCAGAGAGGGCAAAGAGAGCAATGCAAGGATATTTGAATCACTTTTTGGGAAATATCAGTATTGTGAACTCTCATGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTGTCTTTTTCACCTGAATATGGCCCCAAGTTAAAGGAAGAATATGTGATGGTGAAACATTTGCCCAAAATCCTGAGGGATGACGACTCCAGAAAGTGTTGTTTGTCTGACTGTTTCAGTTGCTGTAATGACAACTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTTTTGGCATTGCTAGCAGATCCTTTTGATACACAGCCTCTGGACATAATTGTTTTTGATGTACTGCCGGCCTCGGATGGGAATGGGGATGGTCGTTTATCACTGGCAAGTGAAATGAAGGAACGGAATCCATTACGCCATTCATTCAAGGTGGCTTGTGGAATCCGCAGTATCAGAATTAGAGTGAAAAGTAGAAGTAAAGTCAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCGGAAGGTTGGTGTCATCCTCACCGTTATGGTTCCTTTGCTCCTCCAAGAGGCTTAATTGAAGATGGAAGTCAAGCCCAGTGGTTTATTGATGGGCGAGCAGCATTTGAGGCCATTGCTTCTGCAATTGAGGCTGCAAAATCAGAGATATTCATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTTCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGGAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTGGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAGAAACTTGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCGGAGCATAAAGTGGGAGATTTCCCTCCTCTAATCTGGCCGGGAAAAGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTGAGAAATATCCTCGTATGCCTTGGCACGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCAAAGAGGAACAAAGCTTTATATGAGGAAGCAATACCATTACTAATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCCGAGAGATACAGATTCAAAGTGGGAACATAGACAATCAAACAGTTCTTAAAAGAGAAGATTCTTTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTTTTGCCCCAGGAGTCTGATGGGTCGGATGCTCATGAAGGAGACCAAAAGTTGAATGGTGTAATCTCCTCTTCACATTGCCTGGACAAGCCAAGAAAGATCAGCACTGGTCTTCCCTTTTCATTTCGCAAGGCTAAAATTGTAGCACTTGGTTCAGACACACCAATGAAGGGCTTTGTAGATGATCTGGATTCTGAGCATGATCGTGAGAAAATGTCTCTAGATAGAGTGGCCCATTCTGATTTGCAGAATACAGATCCAGAATGGTGGGAGACGCAAGAACGGGGTGACCAGGGAGGTTTTCCTGAAGAATCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGCGTGAGTCAATGGTCTGCAGGAACAAGTCAAACCGAAGAGAGCATCCATAGTGCTTATTGTTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGGGATGAGATGATACGGAATCGTGTGTTAGAAGCTTTATACCGACGAATTATGCGAGCTTACAATGACAAAAAAACTTTCAGGGTTATAATTGTCATACCACTGCTGCCTGGCTTCCAGGGGGGTCTTGATGATAGTGGTGCAGCATCTGTAAGAGCCATAATGCACTGGCAGTATCGAACCATTTGCAGGGGGCCAAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTCCTAAAATACACGACTACATCTCCTTCTATGGTCTAAGGTCTTATGGTAGACTTAATGGGGGCCCTGTGGCAACCAGCCAGGTTTATGTTCACAGTAAAATCATGATTGTTGATGATTGTATAACTTTGATTGGGTCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGCCGTAGTTATAGAAGACAGAGAGTTGATTGGTTCTTATATGGATGGAAAACCTTGGAAAGCTGGAAAGTTTTCCTTGACCCTTCGATTGTCCTTATGGTCTGAGCACTTGGGTCTCCCTACAGGAGAGGACAATCAAATAATGGACCCAGTTGTTGAATCGACTTACAAGGATATTTGGATGGCTACGGCAAAGACAAATACTACAATTTACCAGGACGTCTTTTCTTGCGTACCTAATGATCTGATACACACAAGACATGCCTTCAGACAAAGTGTGCTTGTTTGGAAAGAAAGGATTGGTCACACGACCATTGATTTAGGAATAGCCCCAGAAAAATTGGAATCCTATTGTGATGGAGGCATTAAGAACACCGATCCCTTGGAGAGATTAGCATCAGTGAAGGGTCACCTGGTCTCTTTTCCCTTGGAGTTCATGTGTCAGGAAAGTCTGAGACCTGCTTTTAATGAAAGCGAATACTACGCTACTCAAGTTTTCCATTGA 3777 0.4361 MKRVAFDYLIAPYRRRRRFNFNGHGAVDVQWRSSLRSDEILATAVSAGCDCRGDVVGSVVPAQRRRGQSDFRGIAESLHRLRVSPGRQRYQPHATLLHHSGSVQTGNVPSRLTLTVFVISWNSILNKMEISDRKHWCQLCEAKACEIQANWILYLNPVTSSYAVFVRVYVQLHFKLCAFTSAVHRLWSCLESKEALFVKYLFLSVFIPTGGYLYISFAFQFKWELMKKAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHNAMEQDDDEGDDETIPLHTDETHESARDRDVPSSAALPIIRPALGRQQSIAERAKRAMQGYLNHFLGNISIVNSHEVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKILRDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEMKERNPLRHSFKVACGIRSIRIRVKSRSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFIDGRAAFEAIASAIEAAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEGKAKQGVQIYILLYKEVALALKINSVYSKKKLLGIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHKVGDFPPLIWPGKDYYNPRESEPNSWEDTMKDELDREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKALYEEAIPLLMPQHHMVIPHYLGRSREIQIQSGNIDNQTVLKREDSFSSSSQDQDIPLLLPQESDGSDAHEGDQKLNGVISSSHCLDKPRKISTGLPFSFRKAKIVALGSDTPMKGFVDDLDSEHDREKMSLDRVAHSDLQNTDPEWWETQERGDQGGFPEESGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDKKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSILHNLYELLGPKIHDYISFYGLRSYGRLNGGPVATSQVYVHSKIMIVDDCITLIGSANINDRSLLGSRDSEIAVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPTGEDNQIMDPVVESTYKDIWMATAKTNTTIYQDVFSCVPNDLIHTRHAFRQSVLVWKERIGHTTIDLGIAPEKLESYCDGGIKNTDPLERLASVKGHLVSFPLEFMCQESLRPAFNESEYYATQVFH 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00161 1258 SUPERFAMILY Phospholipase D/nuclease 896 1105 - -
Vimu10g00161 1258 Pfam PLD-like domain 929 1102 IPR025202 -
Vimu10g00161 1258 CDD PH_PLD 339 486 - -
Vimu10g00161 1258 SMART pld_4 623 650 IPR001736 GO:0003824
Vimu10g00161 1258 SMART pld_4 1055 1082 IPR001736 GO:0003824
Vimu10g00161 1258 SUPERFAMILY Phospholipase D/nuclease 471 742 - -
Vimu10g00161 1258 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1055 1082 IPR001736 GO:0003824
Vimu10g00161 1258 FunFam Phospholipase 890 1109 - -
Vimu10g00161 1258 Gene3D - 392 488 IPR011993 -
Vimu10g00161 1258 MobiDBLite consensus disorder prediction 773 788 - -
Vimu10g00161 1258 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 623 650 IPR001736 GO:0003824
Vimu10g00161 1258 CDD PLDc_vPLD1_2_yPLD_like_2 916 1099 - -
Vimu10g00161 1258 MobiDBLite consensus disorder prediction 773 805 - -
Vimu10g00161 1258 MobiDBLite consensus disorder prediction 270 295 - -
Vimu10g00161 1258 Gene3D Endonuclease Chain A 882 1115 - -
Vimu10g00161 1258 PANTHER PHOSPHOLIPASE D 303 1248 IPR015679 -
Vimu10g00161 1258 Pfam Phospholipase D Active site motif 623 650 IPR001736 GO:0003824
Vimu10g00161 1258 CDD PLDc_vPLD1_2_yPLD_like_1 516 660 - -
Vimu10g00161 1258 Gene3D Endonuclease Chain A 510 745 - -
Vimu10g00161 1258 SUPERFAMILY PH domain-like 394 486 - -
Vimu10g00161 1258 Coils Coil 241 261 - -
Vimu10g00161 1258 PIRSF PLD_euk 754 1258 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vimu10g00161 1258 PIRSF PLD_euk 211 761 IPR016555 GO:0004630|GO:0006654|GO:0048017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00161 Vimu-Chr10 927042 938434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00161 220 1134 Phospholipase D Gene Family (Wang group) AT3G16785 73.002 0.0 1315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00161 K01115 - gmx:100780514 2006.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00161 10 927042 938434 Vimu10g00161 10 927042 938434 ECH