Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00156 ATGGGACAAGAATCAGATCACAAAACCCAGTTAGTGTTGGAGATTTGCTCCATTTCCACACGTTCACTTGCCTGTGTTCATACACTTCTCTCAAACCACCCCTCTAAGCCACCTTTCATAGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGTTGGTCACCATCCGCCAGCAATACCATAAACTTGCCCTGCAACTTCATCCGGACAAGAACAAACATCCAAAGGCTGAAATTGCTTTCAAACTTATATCTGAGGCATATATGTGTCTGTCTGATGCTGCAAAAAGGAAAGGTTTTGACTCAAAAAGATCAAAAAATTTCTGCTTTGAGTGCAATGGAATTCCATATACATCTAAAAAGGTCCCTTTCCCTGGCAATTCCAATGGGTCGACACGATCTTACAAAGTTCGGAGAAATATTAAAGAGATGAGAGAAATGTTAAAGGAGGAGGCTAATGTTATAGAGAAGTGTCTGCGAGCAAATTTGATGTCAAAGAAAGAGTCTCCACTGTACAATCCTGCAGATTACAGACATGGAAGCAGATTCCTGCATAAAGTTGAGAGAGAAGTTCCGGTTTTCAATCCAATGAAATACTTGTACCAAGGATATCCTCATCTCAGAGATCATGTTCATCACAATTGGGAGACATGTTGGTGCTTTGATACACGAAATCTTGTGCAGAATCACAAGAGAGAAGCTAAGTATGGCTCACCAGTGTTTGAGGTCAGATCACAGAATAAATTTCCTTATCAGCCGTCATGA 768 0.4076 MGQESDHKTQLVLEICSISTRSLACVHTLLSNHPSKPPFIDWYCILGVEENAGLVTIRQQYHKLALQLHPDKNKHPKAEIAFKLISEAYMCLSDAAKRKGFDSKRSKNFCFECNGIPYTSKKVPFPGNSNGSTRSYKVRRNIKEMREMLKEEANVIEKCLRANLMSKKESPLYNPADYRHGSRFLHKVEREVPVFNPMKYLYQGYPHLRDHVHHNWETCWCFDTRNLVQNHKREAKYGSPVFEVRSQNKFPYQPS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00156 255 Pfam DnaJ domain 41 102 IPR001623 -
Vimu10g00156 255 CDD DnaJ 41 94 IPR001623 -
Vimu10g00156 255 PANTHER BNAC03G44070D PROTEIN 8 220 - -
Vimu10g00156 255 Gene3D DnaJ domain 40 156 IPR036869 -
Vimu10g00156 255 SUPERFAMILY Chaperone J-domain 31 105 IPR036869 -
Vimu10g00156 255 SMART dnaj_3 40 97 IPR001623 -
Vimu10g00156 255 ProSiteProfiles dnaJ domain profile. 41 105 IPR001623 -
Vimu10g00156 255 PRINTS DnaJ domain signature 61 76 IPR001623 -
Vimu10g00156 255 PRINTS DnaJ domain signature 43 61 IPR001623 -
Vimu10g00156 255 PRINTS DnaJ domain signature 77 97 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00156 Vimu-Chr10 893108 894132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00156 23 103 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.000 8.52e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00156 - - gmx:100778573 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00156 10 893108 894132 Vimu10g00156 10 893108 894132 ECH
Vimu7g01761 7 16223289 16224492 Vimu10g00156 10 893108 894132 PCT