Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00141 ATGAGCTTGCTAGATCTAATGTTAGGTCCACAGTTGGAAAATGTTGCAAAGGAAACTTTGGCATATCAAGTCTTGCATTCGAATTATTTTCAACGCAAGTTGATTCTATCCAGTGGTAAAGAATCATACTATGAACATTTTAGCAAGAGATCATATCCTTCCCCTCGTGACTCCTCGAACTTAGAGTACTATTACAATTGCTTCAAAACCCCCGTGAACCCCGAACAGATTATTCCAAATCCTTTCATCCATAAAATGACGACTGTGATGGAGAAGATGACAAGGATTCTAAGGTTTAAAATTAGTCCAATCCTACGAAGGATTGTTCATGGAACCAGCATTGAGAATCTCTGGACAATATTTCCTACTATAATTCTCGTGTTCATCACTATACCATCATTCACTATGTTATCCTCAATGGACGATGTTGTTGTGGTCCAGCCATTACTATCAAAGCCATTGGGCATCAGTGGCATTGGAGTTATGAGTATTCAGACTATAACAATTCGGATGAGCAGTCGCTTGCTTTTGATTATGATTCCAGAAGATGATCTAGAATTGGGTCAACTACGTTTATTAGAATTTGACAATAGAGTGGTAGCAGCAGCCAAAACTCCTATGCGCATTCTTATAACATCAGCTGATGTACTTCATCGCTGGTCTGTGCCTTCCTTAATTGTGACATGTGATGCAGTACCTTGTCGTTTGAATCAAGTCTCAACTTTTATACAACGAGAAGGGGTTTATTATGGTTTAAACATCTGCAATCCAATTGGGCTGTTAGTAGTACTGATAAAAATGTCGGAAGGAACCAGTTTGGTGCTGGAATCATCTGAAAATGGTACGGATTTGTCTCAGGAAGACATTGACACCATTGAGGAAACAGCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAGTGTGGCTTTTCAATTAGACGACACCGAACTCGAGGGAAAGATGGGGTTGGAAGGGGAGTTACAAGGAGGGATTTCACTTGCCATCGTGGTGGTTATCCCCAGATTAAACCTTCTCATGACGGAAAGGTGCAAAGGAACCGCAAATCTTCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTTCCTGAATGGCGTGTTACTGGTTTTAGGAACACACATAATCATGAGCTGTTAAAATCCAATGAGGTGCGCCTTCTTCCAGCCTATTGTCCGATATCTCCTGATGACAAGAGTCGAATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGTTAAGACTGATGGAGCTGGAGAAAGGGGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGCTTTCTTGGGGTTCATGAAAGGAAAGGCTCCTCAAACAATATTGACGGATCACAACACTTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCGGAAACCAAACATGCTTTTTGTATATGGCATATACTTTCCAAGTTCTCTGATTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGCGGCAAATGGTTGACAAGTATGGACTCCACACAAATAAACATATCATTAGCCTATATTCATTGAGGACATTTTGGGCTTTACCATTCTTGAGGCGCTACTTCTTTGCAGGATTGACCATTACATCTCAGTCTGAGTCCATTAATGCTTTCATTCAACGTTTCTTGAGTGCCCAATCTCAACTACACCGCTTTGTGGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCGAAGCAAAAGATGCAAAGGAAACTTCAAAAAGCGTGCCTCAAAACTGGTTCACCTATTGAATCCCATGCTGCCACTGTACTTACTCCCTATGCCTTGAATAAACTTCAGGAAGAGCTAGTTATGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGATGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATAAGCTGCAGCTGTCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACGTCCCTGATCAATATTTACCAGGTCGATGGCGAGGCACTAGTTCATCTTCTGTTAACAACTTCCGGGGTACCACTAGTAGGGATCAGCCTGAAAGGATGCAACTTTTGGAATCCATGGTTTCAACATTTTTAGTGGAATCCATTGAAACTGAGGAACGTCTGGATGTTGCTTGCGAGGAAATTTCCATGGTGCTATCACGCATCAAAACTCTTCCTAGGTCTCCACATGGGGTGAATGACATTGCATTTGGTTATCCATCAGATTCATTAATCCTCCCAGAGGTAGAAGATACTAATGGAATGATTCACAACTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTCAAGGAAAGAAGGGCCAGAGATGGAGTCGATCTCACAAGGAAGCGAAGACAGTTTTCTGCACCATTGTGTGCTCAATATGGACATGATCCATCTGATTGCTCAATAATGGCCACTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAA 2730 0.4147 MSLLDLMLGPQLENVAKETLAYQVLHSNYFQRKLILSSGKESYYEHFSKRSYPSPRDSSNLEYYYNCFKTPVNPEQIIPNPFIHKMTTVMEKMTRILRFKISPILRRIVHGTSIENLWTIFPTIILVFITIPSFTMLSSMDDVVVVQPLLSKPLGISGIGVMSIQTITIRMSSRLLLIMIPEDDLELGQLRLLEFDNRVVAAAKTPMRILITSADVLHRWSVPSLIVTCDAVPCRLNQVSTFIQREGVYYGLNICNPIGLLVVLIKMSEGTSLVLESSENGTDLSQEDIDTIEETAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSHDGKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNTHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDAFLGFMKGKAPQTILTDHNTWLKEAIAVELPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHTNKHIISLYSLRTFWALPFLRRYFFAGLTITSQSESINAFIQRFLSAQSQLHRFVEQVADIVDFNDRAGAKQKMQRKLQKACLKTGSPIESHAATVLTPYALNKLQEELVMAPQYASFLVDEGCFQVRHHSQTDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHVPDQYLPGRWRGTSSSSVNNFRGTTSRDQPERMQLLESMVSTFLVESIETEERLDVACEEISMVLSRIKTLPRSPHGVNDIAFGYPSDSLILPEVEDTNGMIHNFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSAPLCAQYGHDPSDCSIMATDNMSGDALGYL 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00141 909 Pfam Cytochrome C oxidase subunit II, periplasmic domain 178 252 IPR002429 GO:0004129|GO:0005507|GO:0016020
Vimu10g00141 909 ProSiteProfiles Cytochrome oxidase subunit II copper A binding domain profile. 151 284 IPR002429 GO:0004129|GO:0005507|GO:0016020
Vimu10g00141 909 Pfam SWIM zinc finger 710 735 IPR007527 GO:0008270
Vimu10g00141 909 SMART 26again6 713 740 IPR006564 GO:0008270
Vimu10g00141 909 Pfam MULE transposase domain 444 518 IPR018289 -
Vimu10g00141 909 Gene3D - 165 258 IPR008972 -
Vimu10g00141 909 Gene3D - 82 144 IPR036257 -
Vimu10g00141 909 SUPERFAMILY Cupredoxins 169 253 IPR008972 -
Vimu10g00141 909 Pfam FAR1 DNA-binding domain 325 418 IPR004330 -
Vimu10g00141 909 Pfam Cytochrome C oxidase subunit II, transmembrane domain 98 135 IPR011759 GO:0016020|GO:0022900
Vimu10g00141 909 ProSiteProfiles Cytochrome oxidase subunit II transmembrane region profile. 36 144 IPR011759 GO:0016020|GO:0022900
Vimu10g00141 909 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 305 770 IPR031052 GO:0006355
Vimu10g00141 909 PRINTS Cytochrome c oxidase subunit II signature 122 142 - -
Vimu10g00141 909 PRINTS Cytochrome c oxidase subunit II signature 215 235 - -
Vimu10g00141 909 PRINTS Cytochrome c oxidase subunit II signature 110 122 - -
Vimu10g00141 909 PRINTS Cytochrome c oxidase subunit II signature 235 252 - -
Vimu10g00141 909 PRINTS Cytochrome c oxidase subunit II signature 191 212 - -
Vimu10g00141 909 ProSiteProfiles Zinc finger SWIM-type profile. 705 738 IPR007527 GO:0008270
Vimu10g00141 909 SUPERFAMILY Cytochrome c oxidase subunit II-like, transmembrane region 89 143 IPR036257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00141 Vimu-Chr10 822395 828141 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu10g00141 FAR1 3.8e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00141 - - vum:124836934 878.241