Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00139 ATGAATCTCGGCAGCGGCAAAGGATCAACTTCCGGTTCTCCTCTGAAAACCGGGGAGGTTGTCTCCGACAAGTTTCCGGCGGGTCTCAGGGTGATGGTGGTGGATGATGATCCCACTTGCCTTAGGATACTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGGTGCTTATTCGCTTTCTTTCTTTCTTTTGGGTACAGAAAAGAAATGCAATTTGGCTTTTTTTTTCAGTGTTTATGTGGTCGTGAATAGTAGTACTTGTACTTGTCAATCACCTCCAACTGTGTCTTGTTATGGAGTTTTTGCTTCAAACATGTTGTTTGATACCGTGATTTTGCGATTTGATTCGGTTTGGTTGTTGGGTTCAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAACGGGTTTGACATTGTTTTGAGCGATGTGCATATGCCAGACATGGATGGATTCAAGCTTCTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCTGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACACACGGTGCCTGTGATTATCTGATTAAACCTGTGAGAATCGAGGCTTTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGTTGAAAGATGCAGAGCAATCGGGTAGTGTGGAAGAAGGAGATCGGCTTCTAAAAGGGTGTGACGATGGAGATTATTCATCTTCAGTGAATGAAGGCAAAGGCTCAAAGAAGAGGAGGGATGAGGAGGAAGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCAGTTCCTAAGAAGATTCTGGAGTTAATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCAGGGCAACTTGACCAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCCGGTCAGCTTCCAGCTCAAAGTCTAGCCAAGCTTCAAGCCGCGGCACTTGGCAGGACAACTGCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAGCCCAAGAATAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATGAACTTGCTTCATGGCATTCCTACCAACATGGAGCCAAAACAGCTTGTCACTTTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAGTACTCCTGCTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAATGAAAATGCTGATTCTCATGCAACCAGGTTTCCATCATCTTTGGTTCAGCCTACAGTACCAAATAGTATTTCTAATGGTGTTTTGGGAAATAGAATTACTGGCTCCAGCAACATAACTAGTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAATTTTCCCATCAACCAAACCAATGAAATGTCTGTCGGTAATTTTCCTCTTAGAAGCACTCCAGGTATGACTAGTATCCCAACTAAAGCCATGTTCCATGAAGAAGGTACCTCAAGCATTACAGGACCTGGTGGATTTGTTTCAAGTTATGATATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAGCACGGGCATAACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCGTCAGTTTTAGTCGATCAGGGTTTTCCCTGCTTGCAACAACAGTCTGTGCAAACTAGAGATTCCACTTCAATTGGAAAACCTCTGTTCTCCACTGGGGAAGCCATACATCAGAGTAATCTCCAAAATGTTAGTCAACACCTCAATAACCTTGTTGACAGTTCAGTAAGGGTCAAGGCTGAAACATTTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGATCAGTACGGTCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGTGTAGGACCATCTGATCATGATTTAGACTTTGATGGATATTCCTTAGATAACATTCCGGTTTAG 2226 0.4344 MNLGSGKGSTSGSPLKTGEVVSDKFPAGLRVMVVDDDPTCLRILERMLRACLYEGAYSLSFFLLGTEKKCNLAFFFSVYVVVNSSTCTCQSPPTVSCYGVFASNMLFDTVILRFDSVWLLGSVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDAEQSGSVEEGDRLLKGCDDGDYSSSVNEGKGSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLTNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLAKLQAAALGRTTAKAGVSMPLSDQKNLFSFESPRIRFAEGSLHHLSNSKPMNLLHGIPTNMEPKQLVTLHQSTQTLGNLNMRVSTPAAQNNPLLMQMAQSQPRGQMLNENADSHATRFPSSLVQPTVPNSISNGVLGNRITGSSNITSAYNTVPQNSSLLNFPINQTNEMSVGNFPLRSTPGMTSIPTKAMFHEEGTSSITGPGGFVSSYDMFNELHHQKSHDWDLTSTGITYDSSQHANPLQGNIDVSPSVLVDQGFPCLQQQSVQTRDSTSIGKPLFSTGEAIHQSNLQNVSQHLNNLVDSSVRVKAETFPDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSDHDLDFDGYSLDNIPV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00139 741 Gene3D - 27 231 - -
Vimu10g00139 741 FunFam Two-component response regulator 271 334 - -
Vimu10g00139 741 MobiDBLite consensus disorder prediction 220 240 - -
Vimu10g00139 741 MobiDBLite consensus disorder prediction 220 272 - -
Vimu10g00139 741 Pfam Response regulator receiver domain 122 207 IPR001789 GO:0000160
Vimu10g00139 741 NCBIfam myb-like DNA-binding domain, SHAQKYF class 275 328 IPR006447 GO:0003677
Vimu10g00139 741 SMART REC_2 107 209 IPR001789 GO:0000160
Vimu10g00139 741 MobiDBLite consensus disorder prediction 250 272 - -
Vimu10g00139 741 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 448 IPR045279 GO:0009736
Vimu10g00139 741 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 331 IPR017930 -
Vimu10g00139 741 Pfam Myb-like DNA-binding domain 277 327 IPR001005 -
Vimu10g00139 741 CDD REC_typeB_ARR-like 31 213 - -
Vimu10g00139 741 SUPERFAMILY CheY-like 123 217 IPR011006 -
Vimu10g00139 741 PIRSF RR_ARR_type-B 121 732 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu10g00139 741 PIRSF RR_ARR_type-B 7 56 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu10g00139 741 Gene3D - 272 334 - -
Vimu10g00139 741 ProSiteProfiles Response regulatory domain profile. 30 213 IPR001789 GO:0000160
Vimu10g00139 741 SUPERFAMILY Homeodomain-like 272 332 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00139 Vimu-Chr10 809609 812908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00139 131 741 Response Regulator Gene Family AT3G16857 49.313 2.72e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu10g00139 Response_reg 1.2e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00139 - K14491 gmx:100809583 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00139 10 809609 812908 Vimu10g00139 10 809609 812908 ECH
Vimu7g01747 7 16114931 16118526 Vimu10g00139 10 809609 812908 PCT