Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00138 TTATTAGCCATGTCCATGCATGTCCACGTCTTCATCTTCTTAACTCTTGCCATCTTTTCGGCAACGCCTTCGATGTCTCAGTCGCAAACCGCAGCTTCCTGCAATGGAATATTCGTCTCGTACGTCTACACCGGCGGCGAGCGGCTGCCGCCGAACGTTTCCGACGCGACGCAGCAGCCGTACCGGTTCGAGTCGAGGCTGACAGTGCTGAACAACGGGTTGGAGGAACTGAAGTCTTGGAAGGTGTTCGTGGGGTTTCAACACAGCGAGTGGTTGGTTTCCGCGTCTAACGCCGTGCTCGCGGACGGTACAAGTATTCCCGGTGCGGTTGGGAACGGCACCGTGTTGAGCGGGTCGACGGTGAAGGATCTGAAGACAGCGGTGACGACCGCCGGCGACTTGACCCAGATGCAGGTTCGGGTGGATATGGTGGGGAGCCTTCTTGGGGTGGCGCCACCTTCCGTGCCGATGCCTCGGTCGGTTACTTTGGCTAACGATGGATTCGTCTGTGGTCAACCCTCTCGAGAAGGGAGCAATGAAACTCATGTGTGTTGCAGAAGTGATCCCAGTTCCAGAACAAACGTGAGCACAGAGGTAGAGTTTCTCCCCCGTGAGAAGGGTGATCTTAGCATCACATACGACATCATCAGAACCTACGATTCCAATTACTGGGCAGAGGTTACAATCTCAAACGACAACCCTTTGGGTCGTCTTGACAACTGGAGACTAAGCTGGGACTGGCAAAACGACGAGTTCATCTACACGACAAAGGGTGCATATCCATTAAAAGTGGATTCCTCTGACTGTGTTTTCGGTTCTCAAGGTAGTTTCTACAAGGAACTAGACTTTGCTAACGTCTTGAACTGTGAAAGAAGGCCAACCATAGTCGATCTTCCTCCTTCAAGGTTCAACGATTCAGAACTCGGTCAAATCCCATTCTGCTGCAGGAATGGCACCATCTTGCCACCAACAATGGACCCTAGCATGTCAACTTCAAGGTTCCAAATTCAAGTCTTCAAAATGCCACCCAACCTTAACCGCTCCACGCTCACGCCTCCTCGTAACTGGGAGATAAAGGGTACCTTTAACCCTCACTATGAATGTGGCAACCCTATCAGGGTTAGTCCAACTGAATCCCCTGACCTCACTCACCCTCCATCAAACAAATCATCAATTGCAACTTGGCAAGTGGTCTGCAACATCACAAACACAGAACGTGAAACTCCCAAGTGCTGCGTTTCTTTCTCAGCTTATTACAATGAATCGGTTATCCCATGCAACACGTGTGCATGTGGATGTCCAAGTAATCCGGAGAGAACATGCAGCGCAGCTTCACAAGCTATGTTGCTTCCACCGGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTCGGAAGGCTGTTTCTTGGGCTGAGATTAAACATTTGCCTGTGCCTAATCCCATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCACGTGGCCACGGATTACCGCAAAGGTTGGACCGCGAGGATGACACTTTTCAACTGGGGTGACACCAGTTTTGCTGACTGGTTTGCTGCAGTGGAAATGGACAAAGCTGCGAAGGGGTTTGAGGAAGTGTACTCGTTCAACGGAAGCCTTTTGGAGAGTGTGGAGAACACGATTTTCATGCAAGGGAAAGAGGGGTTGAATTTTCTTGTGGCGGAAACTGATGGATCTAACCCTCGGAAAGATCCTAGGGTGCCGGGGAAACAGCAATCGGTGATATCGTTTACGAAGAAGGAGACCCCTGGAATCAATGTGGTTGGTGGTGATGCGTTTCCAAGTAAAGTGTTCTTCAATGGGGAAGAATGCTCTCTTCCTTCGGTGTTACCAAGCAGTGTTGCCAGAACGGAGGTTCCATTGGCTACTATGATGTTCTTACTGATGTTGTTGTCGATCTTCTTCATGTCGCTATAG 1947 0.5039 LLAMSMHVHVFIFLTLAIFSATPSMSQSQTAASCNGIFVSYVYTGGERLPPNVSDATQQPYRFESRLTVLNNGLEELKSWKVFVGFQHSEWLVSASNAVLADGTSIPGAVGNGTVLSGSTVKDLKTAVTTAGDLTQMQVRVDMVGSLLGVAPPSVPMPRSVTLANDGFVCGQPSREGSNETHVCCRSDPSSRTNVSTEVEFLPREKGDLSITYDIIRTYDSNYWAEVTISNDNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGSFYKELDFANVLNCERRPTIVDLPPSRFNDSELGQIPFCCRNGTILPPTMDPSMSTSRFQIQVFKMPPNLNRSTLTPPRNWEIKGTFNPHYECGNPIRVSPTESPDLTHPPSNKSSIATWQVVCNITNTERETPKCCVSFSAYYNESVIPCNTCACGCPSNPERTCSAASQAMLLPPEALLVPFENRTRKAVSWAEIKHLPVPNPMPCGDNCGVSINWHVATDYRKGWTARMTLFNWGDTSFADWFAAVEMDKAAKGFEEVYSFNGSLLESVENTIFMQGKEGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDAFPSKVFFNGEECSLPSVLPSSVARTEVPLATMMFLLMLLSIFFMSL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00138 648 Pfam COBRA-like protein 223 402 IPR006918 GO:0010215|GO:0016020
Vimu10g00138 648 PANTHER COBRA-LIKE PROTEIN 7 25 646 - -
Vimu10g00138 648 SUPERFAMILY Carbohydrate-binding domain 205 254 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00138 Vimu-Chr10 806545 809245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00138 34 629 COBRA Gene Family AT4G16120 63.228 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00138 - - vum:124836920 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00138 10 806545 809245 Vimu10g00138 10 806545 809245 ECH
Vimu7g01746 7 16109295 16111425 Vimu10g00138 10 806545 809245 PCT