LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g00138	TTATTAGCCATGTCCATGCATGTCCACGTCTTCATCTTCTTAACTCTTGCCATCTTTTCGGCAACGCCTTCGATGTCTCAGTCGCAAACCGCAGCTTCCTGCAATGGAATATTCGTCTCGTACGTCTACACCGGCGGCGAGCGGCTGCCGCCGAACGTTTCCGACGCGACGCAGCAGCCGTACCGGTTCGAGTCGAGGCTGACAGTGCTGAACAACGGGTTGGAGGAACTGAAGTCTTGGAAGGTGTTCGTGGGGTTTCAACACAGCGAGTGGTTGGTTTCCGCGTCTAACGCCGTGCTCGCGGACGGTACAAGTATTCCCGGTGCGGTTGGGAACGGCACCGTGTTGAGCGGGTCGACGGTGAAGGATCTGAAGACAGCGGTGACGACCGCCGGCGACTTGACCCAGATGCAGGTTCGGGTGGATATGGTGGGGAGCCTTCTTGGGGTGGCGCCACCTTCCGTGCCGATGCCTCGGTCGGTTACTTTGGCTAACGATGGATTCGTCTGTGGTCAACCCTCTCGAGAAGGGAGCAATGAAACTCATGTGTGTTGCAGAAGTGATCCCAGTTCCAGAACAAACGTGAGCACAGAGGTAGAGTTTCTCCCCCGTGAGAAGGGTGATCTTAGCATCACATACGACATCATCAGAACCTACGATTCCAATTACTGGGCAGAGGTTACAATCTCAAACGACAACCCTTTGGGTCGTCTTGACAACTGGAGACTAAGCTGGGACTGGCAAAACGACGAGTTCATCTACACGACAAAGGGTGCATATCCATTAAAAGTGGATTCCTCTGACTGTGTTTTCGGTTCTCAAGGTAGTTTCTACAAGGAACTAGACTTTGCTAACGTCTTGAACTGTGAAAGAAGGCCAACCATAGTCGATCTTCCTCCTTCAAGGTTCAACGATTCAGAACTCGGTCAAATCCCATTCTGCTGCAGGAATGGCACCATCTTGCCACCAACAATGGACCCTAGCATGTCAACTTCAAGGTTCCAAATTCAAGTCTTCAAAATGCCACCCAACCTTAACCGCTCCACGCTCACGCCTCCTCGTAACTGGGAGATAAAGGGTACCTTTAACCCTCACTATGAATGTGGCAACCCTATCAGGGTTAGTCCAACTGAATCCCCTGACCTCACTCACCCTCCATCAAACAAATCATCAATTGCAACTTGGCAAGTGGTCTGCAACATCACAAACACAGAACGTGAAACTCCCAAGTGCTGCGTTTCTTTCTCAGCTTATTACAATGAATCGGTTATCCCATGCAACACGTGTGCATGTGGATGTCCAAGTAATCCGGAGAGAACATGCAGCGCAGCTTCACAAGCTATGTTGCTTCCACCGGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTCGGAAGGCTGTTTCTTGGGCTGAGATTAAACATTTGCCTGTGCCTAATCCCATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCACGTGGCCACGGATTACCGCAAAGGTTGGACCGCGAGGATGACACTTTTCAACTGGGGTGACACCAGTTTTGCTGACTGGTTTGCTGCAGTGGAAATGGACAAAGCTGCGAAGGGGTTTGAGGAAGTGTACTCGTTCAACGGAAGCCTTTTGGAGAGTGTGGAGAACACGATTTTCATGCAAGGGAAAGAGGGGTTGAATTTTCTTGTGGCGGAAACTGATGGATCTAACCCTCGGAAAGATCCTAGGGTGCCGGGGAAACAGCAATCGGTGATATCGTTTACGAAGAAGGAGACCCCTGGAATCAATGTGGTTGGTGGTGATGCGTTTCCAAGTAAAGTGTTCTTCAATGGGGAAGAATGCTCTCTTCCTTCGGTGTTACCAAGCAGTGTTGCCAGAACGGAGGTTCCATTGGCTACTATGATGTTCTTACTGATGTTGTTGTCGATCTTCTTCATGTCGCTATAG	1947	0.5039	LLAMSMHVHVFIFLTLAIFSATPSMSQSQTAASCNGIFVSYVYTGGERLPPNVSDATQQPYRFESRLTVLNNGLEELKSWKVFVGFQHSEWLVSASNAVLADGTSIPGAVGNGTVLSGSTVKDLKTAVTTAGDLTQMQVRVDMVGSLLGVAPPSVPMPRSVTLANDGFVCGQPSREGSNETHVCCRSDPSSRTNVSTEVEFLPREKGDLSITYDIIRTYDSNYWAEVTISNDNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGSFYKELDFANVLNCERRPTIVDLPPSRFNDSELGQIPFCCRNGTILPPTMDPSMSTSRFQIQVFKMPPNLNRSTLTPPRNWEIKGTFNPHYECGNPIRVSPTESPDLTHPPSNKSSIATWQVVCNITNTERETPKCCVSFSAYYNESVIPCNTCACGCPSNPERTCSAASQAMLLPPEALLVPFENRTRKAVSWAEIKHLPVPNPMPCGDNCGVSINWHVATDYRKGWTARMTLFNWGDTSFADWFAAVEMDKAAKGFEEVYSFNGSLLESVENTIFMQGKEGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDAFPSKVFFNGEECSLPSVLPSSVARTEVPLATMMFLLMLLSIFFMSL	648

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu10g00138	648	Pfam	COBRA-like protein	223	402	IPR006918	GO:0010215\|GO:0016020
Vimu10g00138	648	PANTHER	COBRA-LIKE PROTEIN 7	25	646	-	-
Vimu10g00138	648	SUPERFAMILY	Carbohydrate-binding domain	205	254	IPR008965	GO:0030246

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g00138	Vimu-Chr10	806545	809245	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g00138	34	629	COBRA Gene Family	AT4G16120	63.228	0.0	816

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g00138	-		-	vum:124836920	1264.21

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g00138	10	806545	809245	Vimu10g00138	10	806545	809245	ECH
	Vimu7g01746	7	16109295	16111425	Vimu10g00138	10	806545	809245	PCT

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