Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00136 ATGATATCGGTACGATCCATTACAAAAATTGAAATCGCTTTCATTATTATTGTTGAGGACCAACGGGCCTGGATCCGACCCGAAACACCAGATCAGAGATCCAGAACCACAACCACCGCACCCCACTGCATACACAACCCACCGCTATTTAAATTTCCTGAGAATATCGTAGAAACCATGGTTATTGTTGTTGCAGCGAAGATGTCGTTGAGGCCAAATGCTAGAACCGAGGTTCGTCGCAACCGTTACAAGGTGGCTGTGGACGCGGATGAGGGTCGTAGGAGGAGGGAGGATAACATGGTGGAGATCCGGAAGAGTAAGCGAGAAGAGAGCCTACAGAAGAAGCGCCGTGAAGGCCTTCAAGTTCAGCAACAGTTCCCCACTCCTCTTCAAGCCTCCATTGTCGAGAAGAAGTTAGAAAGTCTCCCTGCGATGGTTGCTGGAGTGTGGTCAGATGATAACAGCCAGCAGTTGGAAGCGACCACACAGTTTCGGAAGCTGCTTTCGATTGAGCGCAGTCCCCCTATTGAGGAAGTTATTCAAGCCGGAGTTGTGCCTCGATTTGTGGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCATGGGCTCTCACGAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCACGGGGCAGTTCCAACATTTGTCAAGTTGCTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGTTCTATCTTTTCCTTTCTTGGAATCTTGACCTAGCTTGCCGGAATAATAGAACTTTGAAATTCCAGGCAGTGTGGGCGTTAGGAAATGTTGCTGGCGACTCCCCCAGGTGTCGTGATCTTGTTCTTGGCCATGGTGCCTTAATCCCACTGTTGGCCCAGTTGAACGAACATGCAAAACTTTCAATGTTGAGAAATGCAACATGGACCCTGTCAAACTTCTGCAGGGGCAAACCACAGCCTCCATTTGAGCAGGTCAGGGCAGCACTTCCAGCTCTTGAGCGATTAGTATTTTCCAATGATGAAGAGGTCTTAACAGATGCATGCTGGGCGCTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCTGTTATTGAGGCTGGTGTATGTGGCAGACTGGTGCAACTCCTTATGCACCCATCCCCTTCAGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTAACCGGAGATGATATTCAGACTCAGACTATCATCAATCATGGTGCTCTCCCGTGCCTTTTGAGTCTGTTGACACACAATCATAAGAAAAGCATCAAGAAAGAAGCTTGCTGGACCATATCGAACATTACAGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTAGCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCGGCATGGGCAATCTCAAATGCTACGTCTGGTGGTACCCATGAGCAGATCAACCAGGGTTGCATTAAACCACTCTGTGATCTGCTTGTTTGTCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAAGCTGAGAAGAGTTTGGGTAACACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCAGAAGGATTGGAGAAAATCGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGACGATGATGACACACTACCTACAGGAGATGGTGCTCAACCTGGTTTTAACTTTGGAAACGAGCTTCCATTGAAGACTGTTGTGTGGGTAAATGTGCTTTGTCTCACTGTTATATTTTCTATAGGGAACCAGGTTGGATGGAGCAGGGTTGATGCTAGGGTAAACTGTTGGAGTCGAGTCTGGGGTGGGGTTGGGGGCCAGGGGGTGAGTTCGGTCAGTTTGGTCCTTGCACTTCATGGTGTCTGGTTTAAGTCTGGTCTTGTGTCCGTGGTTAATGAGGTGCTGGGTCCAAATAAGAAGGGTGGTGGTGGGTTCAACAGCAGCATAATGACCTTGTTAGAAGTTTATGTTGTGTTAAAAATACATATGCTGTGGGCATATATAACTATTGGAAGGTTCTATGTTGCAGTAGCAGGGACCGTATTATATGGCAGTGGATGGGTTTTCCTCGAATGCGGCTTTTGA 2211 0.464 MISVRSITKIEIAFIIIVEDQRAWIRPETPDQRSRTTTTAPHCIHNPPLFKFPENIVETMVIVVAAKMSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQVQQQFPTPLQASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPTFVKLLSSPSDDVREQFYLFLSWNLDLACRNNRTLKFQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLMHPSPSVLIPALRTVGNIVTGDDIQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLISPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQINQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDDTLPTGDGAQPGFNFGNELPLKTVVWVNVLCLTVIFSIGNQVGWSRVDARVNCWSRVWGGVGGQGVSSVSLVLALHGVWFKSGLVSVVNEVLGPNKKGGGGFNSSIMTLLEVYVVLKIHMLWAYITIGRFYVAVAGTVLYGSGWVFLECGF 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00136 736 Gene3D - 78 117 IPR036975 GO:0006606
Vimu10g00136 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 226 IPR000225 GO:0005515
Vimu10g00136 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 448 488 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 322 361 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 405 446 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 490 527 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 172 213 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 215 277 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 278 320 IPR000225 GO:0005515
Vimu10g00136 736 SMART arm_5 363 403 IPR000225 GO:0005515
Vimu10g00136 736 FunFam Importin subunit alpha 253 581 - -
Vimu10g00136 736 Gene3D - 140 581 IPR011989 -
Vimu10g00136 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 487 IPR000225 GO:0005515
Vimu10g00136 736 PANTHER IMPORTIN ALPHA 263 584 - -
Vimu10g00136 736 Pfam Atypical Arm repeat 542 586 IPR032413 -
Vimu10g00136 736 SUPERFAMILY ARM repeat 73 585 IPR016024 -
Vimu10g00136 736 ProSiteProfiles IBB domain profile. 63 125 IPR002652 GO:0006606|GO:0061608
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 448 487 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 364 402 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 491 525 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 279 320 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 173 213 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 215 245 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Armadillo/beta-catenin-like repeat 330 360 IPR000225 GO:0005515
Vimu10g00136 736 Pfam Importin beta binding domain 79 162 IPR002652 GO:0006606|GO:0061608
Vimu10g00136 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 459 IPR000225 GO:0005515
Vimu10g00136 736 FunFam Importin subunit alpha 78 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00136 Vimu-Chr10 792385 796787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00136 198 480 U-box Gene Family AT3G46510 23.675 3.47e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00136 K15042 - gmx:100808498 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00136 10 792385 796787 Vimu10g00136 10 792385 796787 ECH
Vimu10g00136 10 792385 796787 Vimu6g01900 6 17190157 17196247 ECH
Vimu10g00136 10 792385 796787 Vimu3g02038 3 35273875 35282071 ECH
Vimu7g01742 7 16077740 16082528 Vimu10g00136 10 792385 796787 PCT