Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00131 ATGGGAAGCAAGTTGTGGTCATCTGTTCAAGCTCAAGAAGTTCAAGGCTTGAATTTTTCAAGGAAGTTCTATGCTTGTGAAACTGATGCTGAGTTATCCGATTCTGCTTCTTCAACCTCAGCTGGGAACATGATGAAACACACAAGTACGGTTACAAGGTTTGGTAGTAGCTCAAGGACGTGGGAGTTGGATTATGTGAAAAATATATTGAGTAATGTTGAGTTGATGTATATGGATTTTTCCCTCGGCCAAGCTAGTGAGGTTATAAACTCTCATCTATTCAAACAGTTGGAAGGCCGGAAGGGAGGGTTTAAGCATGATGAGGAGTCTAGGATAAGAAGGAAAGTTACATTTGATTGTGTGAGTGAATGTTTGGACTTGAGATGCAGGCGTTATGTAGGTGGAGGATTCAAAATGTGGACCAAAGGGCTTGAAATGGTGAAAAGAAAAGAATGGTTGGCAGAAGATGTGTACAAGGAGATCTCATGTTGGAGAGGAATGGGAGACTCAATGGTGGATGAGCTTGTGGACAAGGACATGAGCAGCCAGTATGGAAGATGGTTAGATTATGAGGTTGATGCCTCTGAACTCGGATCAGAGGTTGTGGACCGAATATTTAATTCTTTGGTTGATGATGTTGTCACTGAAATCTTGCAATTGTAA 663 0.4163 MGSKLWSSVQAQEVQGLNFSRKFYACETDAELSDSASSTSAGNMMKHTSTVTRFGSSSRTWELDYVKNILSNVELMYMDFSLGQASEVINSHLFKQLEGRKGGFKHDEESRIRRKVTFDCVSECLDLRCRRYVGGGFKMWTKGLEMVKRKEWLAEDVYKEISCWRGMGDSMVDELVDKDMSSQYGRWLDYEVDASELGSEVVDRIFNSLVDDVVTEILQL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00131 220 Pfam Domain of unknown function (DUF4378) 62 212 IPR025486 -
Vimu10g00131 220 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 7 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00131 Vimu-Chr10 761592 767194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00131 61 218 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 38.365 1.79e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00131 - - gmx:100777900 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00131 10 761592 767194 Vimu10g00131 10 761592 767194 ECH
Vimu7g01739 7 16054862 16058553 Vimu10g00131 10 761592 767194 PCT