Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00125 ATGGTTGTCGGTGATGCAATTGTTGGTTTTGTGGTGAGAGAAGAAGGTGTTGGGGGCGAAAATTTGCAGTTGGTTTGTCTTTTTCTGATGGCACACGACTTAACTGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCACACCTTGCAGGATCTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATACATGCCATACTCTGTAATTACAAATATTTCAAGATCAAGGCCAAGCCAGTGCATTTGCCCGAAAGCGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAATTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAGCGATGGGAAAACTGTTAAAGAAGCTCATGAACACTTAAAAGTGAGGATTTCATTTCCTGGTTGTTTATTTGAAGTTTGGATCCAAATTTCCCTAGCAAAGGCCCCTCTTTCAGAGGCTGACACCTGGCAGCCGGGTGAAGTCGGGACTCCCCCTTTTAGGAATAGGAGTCTCAACGAGGTTGGCAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACACGACCTTCGTCCGTAGATGTTATTGGTTGCTTGATAAGTATGTTTTGCTTGACTTTAGGAATTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACGAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGACCCAGCTGCATCTTGGATTCTAGCTGAAGACTTAGATTCTGGGGCGAAAAGTGCTCACAGTGCTGAGCTTAATGACAATTTAACAATTAAAAGTTATGAAGAGAAGCTTCATGAGATTAATACACTTGAATGGGACGACCTAGTTGTTTCAAATGTCAACACTTCTACTACATCTAATGGAGGCAATGTTCCACATTCATATCAACAAAATCAAAGTTTACTTAGTGGAAGCTTTGACAATGTATCTGTTACTCCTTCGGCAGAAGTTCCTCCTTTAGGCTTGCAAAGTCAGGAAAGCTTTGGAACATGGATGAACAACACCATAACAGATACACCATGTTCCATAGACGAGTCAGCTCTCGAAACATCAATTTCTATTGTTCGTGAACCATATTCATCACTGGTGGCAGATAATCAGCTATCTTCTTTGCCTGAACAAGTATTTAATCTCACAGAGGTGTCCCCTGCTTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGATAACTGGATATTTTCATAGTAACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTGCCACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCTATTAGCCATGTTGTAAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCTACAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACCGACAAGATCCTTGATATTTTCTCAAATACAGTGTCACCAAATGCTCTGAAAGAGGCTAGCAGATTTTCCTTCAGAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTCATTTGACGAGCAAACAACTCCATTTCCACAAGTAAAAGATAGCTTGTTTGAAATTGCACTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTGTTATAGGCAGCAAGAGTACTGAATATGATGCACAAGGGCAAGGTGTACTTCATTTGTGTGCAATGCTTGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCACTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAGGCCAAACCTGGTCACAGATCCTACTCCGAAAAATCCTGGTGGGTTTACTGCTGCTGATCTTGCTTATATGAAGGGCTATGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCACACTGGACACTAGCTCAACTGATGTAGTAAACACTCAAGAACTTACTGAGGACCAGCTCTACTTAAAAGAGACATTGGCAGCTTACCGTACTGCTGCCGGGGCAGCGGCACGCATTCAAGCTGCATATAAGGAGCATGAGCTAAATCTACGATACAAGGCTGTTGAATTAAACACCCCAGAGCATCAAGCACGTCGTATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAAGTATGAGACAAAGAAATCAAATGCAGCTGCTGTTCGAATTCAGCATAGATTCCGGACACGGAAAATCCGTAGAGAATTTCTTAATATGAGGCGTCAGGCTATTAAAATCCAAGTAAGACCTTCTCTTCTTGTCTATTATTCTTCATCGTCTTTAGTAAACATGCCGTGTAATGTGATTTCTGAATCTGGGAATGGACTAACATTACCATTGGAAGTGCAGTGGAAAAGGTTCATGGTATATATGTCTTCATTGCAGGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGTTAGAGAAAGCAATTCTTCGCTGGCGGTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATTCTGCTGAGGATGGGGAGCAGGAAGACGGTGTAGAGGAGGAGTTCTTCAGGACTGGCCTGAAACAAGCCGAAGAACGTGTCGAGAGGTCGGTCGTACGTGTGCAGGCCATGTTCCGGTCTAAGAAAGCACAAGAAGAATACAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGCTGGATCTGGAATTTGAAGATTTCATCACTTCTGAAGTTGACATGTTAACTGACATATAG 2991 0.4213 MVVGDAIVGFVVREEGVGGENLQLVCLFLMAHDLTGQLVGSEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNYKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVRISFPGCLFEVWIQISLAKAPLSEADTWQPGEVGTPPFRNRSLNEVGNEERIHVYYAHGQDNTTFVRRCYWLLDKYVLLDFRNLEHIVLVHYRETREIQLQSSPVTPVNSNSSSVSDPAASWILAEDLDSGAKSAHSAELNDNLTIKSYEEKLHEINTLEWDDLVVSNVNTSTTSNGGNVPHSYQQNQSLLSGSFDNVSVTPSAEVPPLGLQSQESFGTWMNNTITDTPCSIDESALETSISIVREPYSSLVADNQLSSLPEQVFNLTEVSPAWASSTEKTKVLITGYFHSNYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVPPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTATMEEKYNWNEFRLQMRLAHLLFSTDKILDIFSNTVSPNALKEASRFSFRTSFISKSWQFLMKSFDEQTTPFPQVKDSLFEIALKNKLKEWLLERIVIGSKSTEYDAQGQGVLHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNLVTDPTPKNPGGFTAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNISGTLDTSSTDVVNTQELTEDQLYLKETLAAYRTAAGAAARIQAAYKEHELNLRYKAVELNTPEHQARRIVAAMKIQHAFRKYETKKSNAAAVRIQHRFRTRKIRREFLNMRRQAIKIQVRPSLLVYYSSSSLVNMPCNVISESGNGLTLPLEVQWKRFMVYMSSLQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDGEQEDGVEEEFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKLDLEFEDFITSEVDMLTDI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00125 996 ProSiteProfiles CG-1 DNA-binding domain profile. 54 233 IPR005559 GO:0003677
Vimu10g00125 996 FunFam calmodulin-binding transcription activator 5 564 704 - -
Vimu10g00125 996 ProSiteProfiles Ankyrin repeat region circular profile. 634 662 - -
Vimu10g00125 996 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 311 975 - -
Vimu10g00125 996 Pfam CG-1 domain 60 133 IPR005559 GO:0003677
Vimu10g00125 996 Pfam CG-1 domain 177 226 IPR005559 GO:0003677
Vimu10g00125 996 SUPERFAMILY Ankyrin repeat 575 696 IPR036770 -
Vimu10g00125 996 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Vimu10g00125 996 SUPERFAMILY E set domains 398 485 IPR014756 -
Vimu10g00125 996 SMART CG_1_2 58 228 IPR005559 GO:0003677
Vimu10g00125 996 SMART ANK_2a 673 704 IPR002110 GO:0005515
Vimu10g00125 996 SMART ANK_2a 634 663 IPR002110 GO:0005515
Vimu10g00125 996 SMART iq_5 797 819 IPR000048 GO:0005515
Vimu10g00125 996 SMART iq_5 868 890 IPR000048 GO:0005515
Vimu10g00125 996 SMART iq_5 945 967 IPR000048 GO:0005515
Vimu10g00125 996 Coils Coil 959 979 - -
Vimu10g00125 996 ProSiteProfiles IQ motif profile. 873 893 IPR000048 GO:0005515
Vimu10g00125 996 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
Vimu10g00125 996 Gene3D - 563 703 IPR036770 -
Vimu10g00125 996 ProSiteProfiles IQ motif profile. 947 975 IPR000048 GO:0005515
Vimu10g00125 996 Gene3D Immunoglobulins 393 488 IPR013783 -
Vimu10g00125 996 FunFam Calmodulin-binding transcription activator 5 393 489 - -
Vimu10g00125 996 Pfam Ankyrin repeats (3 copies) 576 663 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00125 Vimu-Chr10 696634 707555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00125 58 979 CAMTA Transcription Factor Family AT3G16940 49.893 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu10g00125 Ank_2 5.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00125 K21596 - gmx:100819198 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00125 10 696634 707555 Vimu10g00125 10 696634 707555 ECH
Vimu7g01734 7 15983143 15990502 Vimu10g00125 10 696634 707555 PCT