Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00099 ATGAGTTTGAAGGTAGCAAAAGGTGGTGTCGTGGTTGGGAAATACGAGCTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCAATCACCCAAATGTTACTAAAATATTTGAGGTGATGGCGAGCAAAACAAAGATTTACATTGTTCTGGAGTTAGTTGATGGAGGAGAGCTATTTGACAAGATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACGTACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGACATATGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACCCATATGGCTCTGTTCAAGAAAGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCCGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATAGATGATGTAGCCTTCGCTTTCAACGAGTCTGATGTACTGATTTTTGGTCAACGTTTGTACTCAACTTCTTTCATCCACGGTGGGAATTCTGTTAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCCCAAAATTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAGCTGCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGGCATGTGAAAGTTCCTACTCTCTGCTTCAGATCCAGAATTCAAGCCAAATTCAACTTATTATTTGGGTTTCTTACCAAAGCTGA 1380 0.4232 MSLKVAKGGVVVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLINHPNVTKIFEVMASKTKIYIVLELVDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSIDDVAFAFNESDVLIFGQRLYSTSFIHGGNSVKNLVTERKVKPVYMNAFELISRSQNFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKACESSYSLLQIQNSSQIQLIIWVSYQS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00099 459 Gene3D Kinase associated domain 1, KA1 322 444 - -
Vimu10g00099 459 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Vimu10g00099 459 Pfam NAF domain 324 383 IPR004041 GO:0007165
Vimu10g00099 459 CDD CIPK_C 328 436 - -
Vimu10g00099 459 Pfam Protein kinase domain 15 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00099 459 ProSiteProfiles Protein kinase domain profile. 15 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00099 459 FunFam Non-specific serine/threonine protein kinase 321 453 - -
Vimu10g00099 459 Gene3D Transferase(Phosphotransferase) domain 1 9 320 - -
Vimu10g00099 459 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vimu10g00099 459 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vimu10g00099 459 SMART serkin_6 15 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00099 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vimu10g00099 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 437 - -
Vimu10g00099 459 SUPERFAMILY Protein kinase-like (PK-like) 11 282 IPR011009 -
Vimu10g00099 459 FunFam Non-specific serine/threonine protein kinase 9 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00099 Vimu-Chr10 553200 556678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00099 12 454 CBL-interacting serine-threonine protein kinases AT1G01140 65.479 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g00099 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00099 - - gmx:100777218 690.649